Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1817 ATGGGAAGAGCAGAACAAATTATCAATGCCCATCAAACCCAGTCATCATCTTCTTCGAGTGATAGCAGCAATTACCCTTCTGTAACACTAGCAGCTTCTAATTTTTGCCTCTCAAATGTTTGTGGAAAAACCAGAACGAATTTGAGTACTGACCTGAGACTTGATCTTACTATCTCTCCTTCTTCTCAGCCTGATTTAAACTTGAGGGATTGGCCTCCAATTAAATCCACATTGAAGAGCAACCTTGTTGAGAAACAAAGGCAGCTGAGCCAGAGACCCTCTTTGTTTGTCAAAGTCTACATGGAAGGAAATGCTATCGGAAGAAAATTGAACCTGTTGGCGCACCATAGTTATGATGGACTTGTAAAAGCTCTTGGCCATATGTTTAGGACCATCATTCTCTGCCCTAATTCTCAACCCCTTCGTTCTGGGAATTTTCATGTCTTAACTTATGAGGATGAAGAAGGGGACTGGATGATGGTTGGAGATGTGCCGTGGAAGATGTTCTTGAAAAGTGGTGTGAAGAGGCTGAAGATCACAAGAGCAGACAGATGCTACCTAAATTATGCATAA 573 0.4188 MGRAEQIINAHQTQSSSSSSDSSNYPSVTLAASNFCLSNVCGKTRTNLSTDLRLDLTISPSSQPDLNLRDWPPIKSTLKSNLVEKQRQLSQRPSLFVKVYMEGNAIGRKLNLLAHHSYDGLVKALGHMFRTIILCPNSQPLRSGNFHVLTYEDEEGDWMMVGDVPWKMFLKSGVKRLKITRADRCYLNYA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1817 190 Gene3D - 89 188 - -
Glsi03g1817 190 MobiDBLite consensus disorder prediction 7 23 - -
Glsi03g1817 190 Pfam AUX/IAA family 69 181 IPR033389 -
Glsi03g1817 190 MobiDBLite consensus disorder prediction 1 23 - -
Glsi03g1817 190 ProSiteProfiles PB1 domain profile. 94 184 IPR000270 GO:0005515
Glsi03g1817 190 SUPERFAMILY CAD & PB1 domains 86 172 - -
Glsi03g1817 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 45 184 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1817 Glsi-ChrGlsi03 80057789 80058682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1817 84 185 B3 DNA Binding Superfamily AT2G46530 36.275 2.01e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi03g1817 AUX_IAA 1.7e-29 CL0072