Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1807 ATGGCCAGTTTTGCAGGAACCACACAGAAGTGCATGGCCTGTGACAAAACGGCATACCTGGTTGATAAGCTAACGGCAGATGGCCGTATCTATCACAAGGCTTGCTTCCGATGCCACCATTGCCGGAATACCCTCAAGCTAAGCAACTACTGTTCTTTTGATGGGGTGCTCTACTGCAGACCTCACTATGATCAACTCTACAAGCGAACTGGTAGCCTCGACAAGAGCTTTGAAGGAACACCCAAAATTCAGAAACCGGAAAGACAAACTGAGAATGAGAATGCTAAGGTACTCTCCAATGTGTTCTTGGGCACCAAAGACAAATGTACTGGTTGCAAAAAGATAGTTTATCCATTAGAGAGGGTTTCAGTTAATGGGACTCCCTACCACAAGAGCTGCTTCAAGTGTACCTATGGAGGTTGTACTATAAGCTCAGCAACATTTATTACACATGAGGGAAAGCTGTATTGCAAGCATCATCACATTCAACTTTTCAAGGAGAAAGGAAACTACAGCCAGCTCGAGGGTGACCGGGAGAAGAACTCTATGACTGAGGAAGTCACTGCTGCATTGAAAGTTGTTGCCTAA 588 0.4524 MASFAGTTQKCMACDKTAYLVDKLTADGRIYHKACFRCHHCRNTLKLSNYCSFDGVLYCRPHYDQLYKRTGSLDKSFEGTPKIQKPERQTENENAKVLSNVFLGTKDKCTGCKKIVYPLERVSVNGTPYHKSCFKCTYGGCTISSATFITHEGKLYCKHHHIQLFKEKGNYSQLEGDREKNSMTEEVTAALKVVA 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1807 195 ProSiteProfiles LIM domain profile. 107 167 IPR001781 -
Glsi03g1807 195 Gene3D Cysteine Rich Protein 1 71 - -
Glsi03g1807 195 FunFam LIM domain and actin-binding 1 103 173 - -
Glsi03g1807 195 PANTHER OS06G0237300 PROTEIN 2 94 - -
Glsi03g1807 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 134 - -
Glsi03g1807 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Glsi03g1807 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Glsi03g1807 195 SMART lim_4 108 160 IPR001781 -
Glsi03g1807 195 SMART lim_4 10 62 IPR001781 -
Glsi03g1807 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Glsi03g1807 195 FunFam LIM domain and actin-binding 1 5 75 - -
Glsi03g1807 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Glsi03g1807 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 135 174 - -
Glsi03g1807 195 Gene3D Cysteine Rich Protein 104 173 - -
Glsi03g1807 195 Pfam LIM domain 11 65 IPR001781 -
Glsi03g1807 195 Pfam LIM domain 109 164 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1807 Glsi-ChrGlsi03 80006047 80007756 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Glsi03g1807 LIM 1.3e-11 CL0167