Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1805 ATGGGTGCTCCTAAGCAGAAATGGACACCGGAAGAAGAAGCAGCGCTTAAAGCTGGAGTCGTTAAGCATGGGGCTGGAAAATGGCGCACAATACTTAAGGATCCAGAGTTTAGTAGTGTGTTGTACCTGCGGTCAAATGTAGATCTCAAGGATAAATGGAGAAATATGAGTGTGATGGCACATGGATGGAGCTCCAGGGACAAGTATAGGTTGGCCATTAGAAGGGTGCAACAGGTCCCAAAACGGGGAGAAAACCCTCTGGCTCTCTCTTATGTTGTTCCGAGTGATGAAGAAATTATGGATGTTAAGCCTCCTCAAGTTTCCAGATATATGATGCAGATTCCTGGTCCAAGGAGGTCTACAGTAAGATTGGATAACCTTATTATGGAAGCAATAACTAGCTTGAAAGAGCCTGGTGGTTCCAATAAGACAAATATTGCAGCATACATAGAGGACCAATATTGGGCACTCTCAGACTTCAAAAAATCATTGTCAGCAAAATTGAAGTTTTTGACAGCAAGTGGAAAACTTATCAAGGTAAAGCGGAAATATAGGATTGCACCTAATCCGGCATATTCTGATGGAAGAAGAAAAACGTCCATGTTATTATTGGATGGAGGGCATAGAATGTCTAGGAAATTTGATAAGGATGATGCCGAAGCCTTTACAAACTCTCATATAGATTTAGAATTGGCAAAGATGAGGTCTATGACTGCACAAGACGCTGCTGCAGTTGCTGCTCGAGCAGTTTCAGAAGCAGAAGCTGCTATAGCAGAAGCCGAAGCAGCTGCGAGGGAAGCAGAGGTGGCAGAAGCTGATGCAGATGCAGCACAAGCTTTTGCAGAAGCTGCCTCGAAAACACTGAAAGGGAGAAACCCCCCAAAGATGATTATCCGAGCTTGA 903 0.4408 MGAPKQKWTPEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMAHGWSSRDKYRLAIRRVQQVPKRGENPLALSYVVPSDEEIMDVKPPQVSRYMMQIPGPRRSTVRLDNLIMEAITSLKEPGGSNKTNIAAYIEDQYWALSDFKKSLSAKLKFLTASGKLIKVKRKYRIAPNPAYSDGRRKTSMLLLDGGHRMSRKFDKDDAEAFTNSHIDLELAKMRSMTAQDAAAVAARAVSEAEAAIAEAEAAAREAEVAEADADAAQAFAEAASKTLKGRNPPKMIIRA 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1805 300 PANTHER SINGLE MYB HISTONE 4 1 292 IPR044597 GO:0003691
Glsi03g1805 300 SUPERFAMILY Homeodomain-like 2 71 IPR009057 -
Glsi03g1805 300 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi03g1805 300 Coils Coil 243 273 - -
Glsi03g1805 300 Gene3D - 118 197 IPR036388 -
Glsi03g1805 300 SMART sant 4 59 IPR001005 -
Glsi03g1805 300 Gene3D - 2 59 - -
Glsi03g1805 300 FunFam Telomere repeat-binding factor 1 118 199 - -
Glsi03g1805 300 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Glsi03g1805 300 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Glsi03g1805 300 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi03g1805 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Glsi03g1805 300 FunFam Telomere repeat-binding factor 1 8 85 - -
Glsi03g1805 300 CDD SANT_TRF 6 56 - -
Glsi03g1805 300 FunFam Telomere repeat-binding factor 1 2 58 - -
Glsi03g1805 300 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi03g1805 300 SUPERFAMILY "Winged helix" DNA-binding domain 119 197 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1805 Glsi-ChrGlsi03 79987949 79990983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1805 1 300 Single Myb Histone (SMH) Gene Family AT1G49950 64.262 2.14e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi03g1805 Linker_histone 2.3e-08 CL0123