Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi03g1789 | ATGTCGAGCTCTAGGAGGAGCAAGGGTCGCCAAAAGGTTGAGATGAAGAAGATGAGCAACGAGAGCAACCTACAAGTCACATTCTCCAAGCGTCGCACTGGACTTTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGCGCCGAGGTTGCTCTCATCGTCTTCTCGCCCGGCGACAAGGTTTTCTCTTTCGGCCACCCCAGTGTGGAAGCAGTTGTGGACCGCTACATCACGCGGGCCCCACCGCCGCAATCCTCGGGCACCATGCAACTCATTGAGGCTCACCGCAACGCCAACGTGCGTGAGCTGATTGGGCAGTTCACACAAATCTCCGGCCAGCTGGACGGAGAGAGGAAGCGCGGGGAGGAGTTGAACCGTATGAGGAAGGCCAGCCAGGTTCAGTGTTGGTGGGCAAGTCCTATTGAGGACATGACGAAGCCTCAGCTTGAGCAGTTCAAGGCTGCGCTCGAGGAGCTGAAGAAGAGCGTGACTAGGCAGGCCGATAGGATGCTGATTCAGAGTGCTGGTAACTCTAATCAGTTTTTTGCTGGAAGTTCCTCTTCCAAGGCAGCGCCGCCACCACCTCAGGTGTTTCAGCCGCCACCAATGATTCAGAATCCCGGGTTCAACAACATGCGCGGATATGGATCTGCAGGGTTTTATTGA | 666 | 0.5541 | MSSSRRSKGRQKVEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCGAEVALIVFSPGDKVFSFGHPSVEAVVDRYITRAPPPQSSGTMQLIEAHRNANVRELIGQFTQISGQLDGERKRGEELNRMRKASQVQCWWASPIEDMTKPQLEQFKAALEELKKSVTRQADRMLIQSAGNSNQFFAGSSSSKAAPPPPQVFQPPPMIQNPGFNNMRGYGSAGFY | 221 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1789 | 221 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Glsi03g1789 | 221 | CDD | MADS_MEF2_like | 9 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
| Glsi03g1789 | 221 | Gene3D | - | 20 | 87 | IPR036879 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | Coils | Coil | 149 | 169 | - | - | |
| Glsi03g1789 | 221 | Gene3D | - | 88 | 182 | - | - | |
| Glsi03g1789 | 221 | PRINTS | MADS domain signature | 45 | 66 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | PRINTS | MADS domain signature | 10 | 30 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | PRINTS | MADS domain signature | 30 | 45 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | SMART | madsneu2 | 8 | 67 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | FunFam | Agamous-like MADS-box protein AGL62 | 20 | 86 | - | - | |
| Glsi03g1789 | 221 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 17 | 64 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | ProSiteProfiles | MADS-box domain profile. | 8 | 68 | IPR002100 | GO:0003677|GO:0046983 | |
| Glsi03g1789 | 221 | PANTHER | MADS BOX PROTEIN | 10 | 166 | - | - | |
| Glsi03g1789 | 221 | SUPERFAMILY | SRF-like | 9 | 93 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi03g1789 | Glsi-ChrGlsi03 | 79824441 | 79825106 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1789 | 5 | 191 | Type I MADS-box Gene Family | AT5G60440 | 56.085 | 8.58e-70 | 214 |
Transcription factors information