Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1788 ATGGTGAAGAAAATTAAGTCTACCTCAGGTCGCCAAAAGATCTCCATTGAGAAAATACCAAAGAAAAGTAACTTACAAGTTACATTCTCTAAGCGTCGTTCCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACGCTTTGTGGGGTAGAGATTGCGATGATAGTGTTTTCTCCATCTAATAAAGCCTTCTCTTTTGGCCACCCAGAAGTTGAATCCATAATTGAACGTTATCTTACTCACGAGCATCATCCCAATCTCGTTGAGGCGCATGGAAACTCTAATGTTGACAATCTCAATATGCAGCTGACTCAACTTGTTAACCAACTGGAGATTGAGAAGAAGCGAGGAGAAGAGCTTCATCGTGCAAGGAAAGCTAGGCAGAGACAGTGCTGGTGGGAAAACCCCATTGATGAGCTTGGTTTGATTGAGTTGCAGCAATTAATGTTTTCAATGAAGGAGCTAAAGAAGGATGTTACGAAACAAGCTAACAAAATCTTGATGGATCAAACCAGTTTTTCTTCACCAAATGGATTATTTGGAGGTTTTGATCATGCCTTTGAGAACAAAGCTGCTTCTGGGATTAATGCTGCTTCCTGTATTAATCTTCCTACTGGCTATAATAACCCATATGGCCCTTTAAGTTCTATTTGGGGGAATTAA 660 0.4091 MVKKIKSTSGRQKISIEKIPKKSNLQVTFSKRRSGLFKKASELCTLCGVEIAMIVFSPSNKAFSFGHPEVESIIERYLTHEHHPNLVEAHGNSNVDNLNMQLTQLVNQLEIEKKRGEELHRARKARQRQCWWENPIDELGLIELQQLMFSMKELKKDVTKQANKILMDQTSFSSPNGLFGGFDHAFENKAASGINAASCINLPTGYNNPYGPLSSIWGN 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1788 219 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Glsi03g1788 219 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Glsi03g1788 219 Gene3D - 21 86 IPR036879 GO:0003677|GO:0046983
Glsi03g1788 219 PANTHER MADS BOX PROTEIN 11 161 - -
Glsi03g1788 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Glsi03g1788 219 Coils Coil 95 119 - -
Glsi03g1788 219 SUPERFAMILY SRF-like 10 86 IPR036879 GO:0003677|GO:0046983
Glsi03g1788 219 CDD MADS_MEF2_like 10 82 IPR033896 GO:0000977|GO:0045944
Glsi03g1788 219 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Glsi03g1788 219 Gene3D - 87 173 - -
Glsi03g1788 219 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Glsi03g1788 219 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Glsi03g1788 219 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1788 Glsi-ChrGlsi03 79809521 79810180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1788 5 201 Type I MADS-box Gene Family AT5G60440 47.317 1.09e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi03g1788 SRF-TF 2.5e-24 No_clan