Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1782 ATGCTACTGCAGAACAAAAGCAATGGCGCCTACGGAAAAAGCAACACATCACGAATTGTTATTGCCATAGTTGTGCCCATTGCTTTGATTGCCGCCCTGCTCATCCTTATCTGCATCTATTTAAGAAAGAGGAAGCCACGGAAATATATTAAAAATCCAATCAAACGGGCACAGTTGTCTTGGGAAAGGCGACAAAAGATCATAGGAGGCATTGCTAGAGGACTTCTTTACCTTCACGAGGATTCTCGCTTGCGGATTATTCATCGTGATCTCAAAGCAAGTAATATTCTTTTAGATGCAGAGATAAATTCAAAGATATCAGATTTTGGCATGGCAAGACTTTTTGAAATCGACCAAACTCAAGGCAATACAAGTAGAATAGTTGGAACCTATGGATATATGGCACCCGAATATGCAATGCATGGACATTTTTCAGTGAAGACGGATGTTTTTAGTTTTGGTGTACTAGTTCTAGAAATTGTAAGTGGCCGAAAAAACAGTGGAGTTTTTCAAGGGGAGAATGCAGAAGATCTACTCAGCTTTGCATGGAAAAACTGGAGGGAAGGAACAGCTGCAAATATTGTTGATCCAACAATTATTGATGGTCCAAGAAATGAGATAATGAGATGCATCCACATTGGGTTGCTTTGTGTTCAAGAAAATGTAGCTGACAGACCAACCATGGCAGCAGTTGAACTCATGTTTAACAGCTACTCTGTCACTTTTCCATTGCCCTCTCAACCTGCTTTATTTACGAATAGTAGAAATTTTTCATACAGCAGATCAGGAGAGTATAATTCTGAGGCAACAAGATCAAGGGAATCGAAAAATCAAGCTGTTCAAGCATCATCAAATGATGCTTCAATCAGTGAGCTATTTCCTCGTTAG 888 0.3975 MLLQNKSNGAYGKSNTSRIVIAIVVPIALIAALLILICIYLRKRKPRKYIKNPIKRAQLSWERRQKIIGGIARGLLYLHEDSRLRIIHRDLKASNILLDAEINSKISDFGMARLFEIDQTQGNTSRIVGTYGYMAPEYAMHGHFSVKTDVFSFGVLVLEIVSGRKNSGVFQGENAEDLLSFAWKNWREGTAANIVDPTIIDGPRNEIMRCIHIGLLCVQENVADRPTMAAVELMFNSYSVTFPLPSQPALFTNSRNFSYSRSGEYNSEATRSRESKNQAVQASSNDASISELFPR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1782 295 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1782 295 Gene3D Transferase(Phosphotransferase) domain 1 46 241 - -
Glsi03g1782 295 MobiDBLite consensus disorder prediction 261 295 - -
Glsi03g1782 295 ProSitePatterns Serine/Threonine protein kinases active-site signature. 86 98 IPR008271 GO:0004672|GO:0006468
Glsi03g1782 295 SMART serkin_6 5 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1782 295 FunFam cysteine-rich receptor-like protein kinase 10 43 242 - -
Glsi03g1782 295 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 35 266 - -
Glsi03g1782 295 SUPERFAMILY Protein kinase-like (PK-like) 52 266 IPR011009 -
Glsi03g1782 295 Pfam Protein kinase domain 36 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1782 Glsi-ChrGlsi03 79709433 79712729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1782 35 295 Receptor kinase-like Gene Family AT4G23150 54.198 4.06e-97 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g1782 Pkinase 7.9e-28 CL0016