Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1779 ATGCAAAAGAACTTACCTTTTCGTAATCGTTTGGATAGCAAGGCAAGATTTCAAAGAATAGAAATGCTATTGCCCTTGGTCTCACTCGAACAAAACTTCGACAATGACAAGAACATCACTGCTTCAAATCTTGATTTGTTCAACCAAATATTGTCGAGCTTGTTAAATGATTTGGCAGCGAAAGCTGCAAATTACCAGTCAGAGAAAAAGTACGCTACCAGCAAAGCGAAATTCACGAGCTGAAAAGGCAATGTCTCAGTAGTTGTGGCTATTTTTGTCCCAATTGCTGTTCTGTTTGGGCTTTTCATTCTGGGAGTTAGAAATGATTTCACATTTGCAGATTCTTTGCAATTTGACTTGGCTACAGTTGAAGCTGCCACAAACGGCTTCACAATCACAAGCAAAGCAGCTCCTCCAACTTACGCTGCTCATTACTGTAACAGCACCACCTACGCACCGTACACAATATTCCAACGCAATCTCAACGTCCTCCTCTCCTCCCTCGTCTCCAACGCCTCCCAGGAGGGCGGTTACTACATGACCATCATGGGCTTCGGGACCACCGACGCCGTCAACGGACTTTTCATCTGCCGTGGCGACATAATCGACCCCGCCGTCTGTCAAAACTGCGTCACCGCTGCCGCCTCAGAGATTAAACGCCGCTGCCCCAATCAAACGGAGGCGTTAATCTGGTACGACGAGTGCATGTTGCGTTACACGAACAAGTATTTCAGGTACGGCAGCGTCGTCCCCGGCGCAAACCTTGACGAAGGCAAGAGCGTTTCCGGCGGGGAGATGGGGGGGTTCAACGAGTCATTGTTTGGATTGTTGAATGAGTTGGCGACGGAAGCTGCAAGATCGTCGTCGGTGAAGAAGTTCGCGGCGGGGAAAGTGACGTTGGCGAGCCCCAAAAAGATGACTCTTTATGCGTTGGAACAGTGCACGGGGGATTTGAGCAGTGGTCAGTGTGAGAGGTGTTTGCAGAACGCCATGGGAACTTTTGCTAAGTGTTGTGAGGGAAAACAAGGGGCAAGAGCTCTTCTTTCGTCCTGTAATATCAGATACGAACTGTATCCGTTTTACAATGTAAGTGCTGTACCAGCTGGACCACTACTGCTTCCTCCTCCTGCTTCTTCAGGAAAAAGGAAATTTGGAACACGAGCAATTGTCATAGTTGTTGTCCTAGGTACGGTTTCAGTTATAATCATACTTTTTGGTGTCTTTTTCCTGCTGAGAAGATCGAGAAAGAAGCGTAAGACTGTTCAAAAAGAAAATTTTGGAGAAGAAATACCCCCTTCAGAGTCATTGCAATTCACTTTGGCTACAATTGAAGCTGCGACAAACAAGTTTTCACAGCAGAACAAGATTGGCAGAGGTGGATTTGGGGAAGTTTACAAGCATTCTCGACTCAAAGTTATACATCGTGATTTAAAACCTAGCAACGTATTGTTAGATGATAAAATGAATCCAAAAATCTCAGACTTTGGTTTAGCAAGGATAGTTGCTATAGATGAAGACCAAGGAAGTACTAATAGAATTGTTGGAACATAG 1551 0.4545 MQKNLPFRNRLDSKARFQRIEMLLPLVSLEQNFDNDKNITASNLDLFNQILSSLLNDLAAKAANYQSEKKYATSKAKFTSXKGNVSVVVAIFVPIAVLFGLFILGVRNDFTFADSLQFDLATVEAATNGFTITSKAAPPTYAAHYCNSTTYAPYTIFQRNLNVLLSSLVSNASQEGGYYMTIMGFGTTDAVNGLFICRGDIIDPAVCQNCVTAAASEIKRRCPNQTEALIWYDECMLRYTNKYFRYGSVVPGANLDEGKSVSGGEMGGFNESLFGLLNELATEAARSSSVKKFAAGKVTLASPKKMTLYALEQCTGDLSSGQCERCLQNAMGTFAKCCEGKQGARALLSSCNIRYELYPFYNVSAVPAGPLLLPPPASSGKRKFGTRAIVIVVVLGTVSVIIILFGVFFLLRRSRKKRKTVQKENFGEEIPPSESLQFTLATIEAATNKFSQQNKIGRGGFGEVYKHSRLKVIHRDLKPSNVLLDDKMNPKISDFGLARIVAIDEDQGSTNRIVGT 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1779 516 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 139 244 - -
Glsi03g1779 516 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 115 366 - -
Glsi03g1779 516 Gene3D Phosphorylase Kinase; domain 1 411 471 - -
Glsi03g1779 516 FunFam Os07g0541700 protein 441 516 - -
Glsi03g1779 516 ProSiteProfiles Protein kinase domain profile. 309 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1779 516 CDD TM_EGFR-like 385 419 - -
Glsi03g1779 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Glsi03g1779 516 Gene3D - 139 244 IPR038408 -
Glsi03g1779 516 Gene3D - 259 360 IPR038408 -
Glsi03g1779 516 SUPERFAMILY Protein kinase-like (PK-like) 439 516 IPR011009 -
Glsi03g1779 516 Pfam Salt stress response/antifungal 146 241 IPR002902 -
Glsi03g1779 516 Pfam Salt stress response/antifungal 268 358 IPR002902 -
Glsi03g1779 516 ProSiteProfiles Gnk2-homologous domain profile. 249 360 IPR002902 -
Glsi03g1779 516 Pfam Protein kinase domain 467 515 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1779 516 Gene3D Transferase(Phosphotransferase) domain 1 472 516 - -
Glsi03g1779 516 FunFam Cysteine-rich receptor-like protein kinase 10 254 360 - -
Glsi03g1779 516 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1779 Glsi-ChrGlsi03 79609680 79621408 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1779 429 516 Receptor kinase-like Gene Family AT4G05200 46.739 4.24e-16 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g1779 Stress-antifung 1.6e-14 No_clan