Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1778 ATGCAAAACCTGGAAGATTCAATTAATAATGAAAGAGGAGAATCCAGAGTTTTTAATATCATAGACTACCCCTTCTGCAACGGTGGAGAAAGAAAAATATTGTTCATAAACATGTCTATCTTCAAATCCTCTTCGACCCACTTCATACTTCTCTCTCTGTTCGGATTGCTGAGCTTTACAAGCGAAGCTGCTCCCATTTTCAGCGATTCTGTCTGTGCAAACGGAACCTTTTTCGAACCCCACAGCAGATTTGAAGCCAATTTGAATGTCCTTCTCTCTTCTCTTACCTCCAACGCCTCCCTCCACGACGGTTTCTACCGTACCACCGTGGCTCAGGGAACTCCAGACGTCGTCACCGGACTTTTTCTGTGCCGCGGCGACGCCACCCCAACTATATGTCAAGATTGTGTCGCCGCCGCAGCCAAAGAGATAAGACGCCTCTGCCCAAATCAAACAGAGTCAATAGTCTGGTATGATGTGTGTCTGCTTCGTTACTCGAACCAGTCCTTGAATAACATCGTCCCTTCTGTGGACTTGCAAGCTAACGCCAGTATAGCTAGTGCGGATCAGCGTCGGTTCAATGATTTGTTGTCGACCATGATGAATGATTTGACTGCAAAAGCTAATACCCAGACAGGAAAGAAGTTCGCAACGGAAGAAGAGAAATTCACCTCTTCACAAACGTTGTATGGCCTCGCGCAGTGTACTCCCGACTTGACGACTTTTGACTGTAATATGTGTTTAAGAAGCGCCATTGGAGATCTGCCAACCTGCTGTAGTGGGGAAACGGGTGCAAGGGTTCTGCTTCCGGCATGTAATATAAGATATGAACTTTACCCATTTTACAATGTAACCGAAACACCCTCTGCACCAGTATTTCCTCCTCGTTCAGGCAGAAGCAATATCTCAATAATTGTTGCGATTGTTGTCCCGATTATTGTTTCCGTGGCACTTTTTGTTCTGGCATGCTGTTTCCTGCGTAAGAGAGCAAGCAAGAAGTCTAATACAGTCACAGAGGATGGAATTGGGAATGATCTTACAGCTATAGAGTCTTTGCAATTTGAATTGGCTACAATAGAAGCTGCCACTAACAGGTTCTCAGATGAGAAGAAGATTGGCCAAGGTGGATTTGGTACAGTTTATAAGGGTATCCTCCCTAATGGACTGGAGATAGCTGTGAAGAGGTTGTCGGTGACCTCTTTGCAGGGAGCTTTGGAGTTCAGGAACGAAGCATCCCTTGTAGCCAAGCTTGAACATAGAAATTTAGTGAGGCTTTTGGGGTTTTGCTTGGAGGGGCAGGAGAAGATACTTGTCTACGAATATATCCCAAACAAAAGCCTTGATCACTTTCTTTTTGATCCTGAAAAGAAAAGAGTGTTAGATTGGTCAAGACGCTACAAGATCATATTAGGAATTGCTCGAGGAATTCTTTATCTACATGAAGATTCTCAACTTAGAATAATACATCGTGATCTTAAAGTTAGTAATGTTCTATTAGATGCCAATATGAACCCAAAGATTTCAGATTTTGGAATGGCGAAAATCTTCCAAGGGGATCAGACTGAAGTAAATACAGGAAGAATAGTTGGAACTTATGGTTACATGTCTCCAGAGTACGCAATGCATGGACAGTTCTCCGTGAAATCAGATATGTTTAGCTTTGGTGTCTTAGTTTTGGAGATTGTCAGTGGCAAGAAGAACACTGATTTTTATCAATCACATCATGCTGATGACCTCCTAAGTTTTGCTTGGAAAAACTGGACAGAAGAAACACCTTTGGAGTTTTTGGATCCAACGCTGAGGGGTTCTTATTCAAGAAATGAAGTAATAAGATGCATCCATATTGGTTTATTGTGTGTTCAGGAGAATCCATCTGACAGACCTTCAATGGCAACTGTAGCACTTATGCTGAACAGTTATTCTGTTACTATGTCATTACCACGACAGCCTGCATCTTTTCTTCGTGGAAGAACACCAAACAGGCTAAAAATTGGCCTTGATTCTGATCAATCTACCTCCTCTTCAATTCCATGGTCTAAGAATGAAGTATCCATTACTGAAGTATACCCTAGATGA 2076 0.4258 MQNLEDSINNERGESRVFNIIDYPFCNGGERKILFINMSIFKSSSTHFILLSLFGLLSFTSEAAPIFSDSVCANGTFFEPHSRFEANLNVLLSSLTSNASLHDGFYRTTVAQGTPDVVTGLFLCRGDATPTICQDCVAAAAKEIRRLCPNQTESIVWYDVCLLRYSNQSLNNIVPSVDLQANASIASADQRRFNDLLSTMMNDLTAKANTQTGKKFATEEEKFTSSQTLYGLAQCTPDLTTFDCNMCLRSAIGDLPTCCSGETGARVLLPACNIRYELYPFYNVTETPSAPVFPPRSGRSNISIIVAIVVPIIVSVALFVLACCFLRKRASKKSNTVTEDGIGNDLTAIESLQFELATIEAATNRFSDEKKIGQGGFGTVYKGILPNGLEIAVKRLSVTSLQGALEFRNEASLVAKLEHRNLVRLLGFCLEGQEKILVYEYIPNKSLDHFLFDPEKKRVLDWSRRYKIILGIARGILYLHEDSQLRIIHRDLKVSNVLLDANMNPKISDFGMAKIFQGDQTEVNTGRIVGTYGYMSPEYAMHGQFSVKSDMFSFGVLVLEIVSGKKNTDFYQSHHADDLLSFAWKNWTEETPLEFLDPTLRGSYSRNEVIRCIHIGLLCVQENPSDRPSMATVALMLNSYSVTMSLPRQPASFLRGRTPNRLKIGLDSDQSTSSSIPWSKNEVSITEVYPR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1778 691 ProSiteProfiles Protein kinase domain profile. 366 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1778 691 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 65 170 - -
Glsi03g1778 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Glsi03g1778 691 Gene3D - 66 169 IPR038408 -
Glsi03g1778 691 Gene3D - 179 281 IPR038408 -
Glsi03g1778 691 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 327 441 - -
Glsi03g1778 691 ProSiteProfiles Gnk2-homologous domain profile. 66 170 IPR002902 -
Glsi03g1778 691 ProSitePatterns Protein kinases ATP-binding region signature. 372 394 IPR017441 GO:0005524
Glsi03g1778 691 SMART serkin_6 366 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1778 691 Pfam Protein tyrosine and serine/threonine kinase 369 634 IPR001245 GO:0004672|GO:0006468
Glsi03g1778 691 FunFam cysteine-rich receptor-like protein kinase 10 442 644 - -
Glsi03g1778 691 Gene3D Transferase(Phosphotransferase) domain 1 442 648 - -
Glsi03g1778 691 Gene3D Phosphorylase Kinase; domain 1 327 441 - -
Glsi03g1778 691 CDD STKc_IRAK 372 638 - -
Glsi03g1778 691 ProSiteProfiles Gnk2-homologous domain profile. 174 281 IPR002902 -
Glsi03g1778 691 FunFam Cysteine-rich receptor-like protein kinase 25 176 281 - -
Glsi03g1778 691 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 60 688 - -
Glsi03g1778 691 Pfam Salt stress response/antifungal 188 279 IPR002902 -
Glsi03g1778 691 Pfam Salt stress response/antifungal 72 168 IPR002902 -
Glsi03g1778 691 SUPERFAMILY Protein kinase-like (PK-like) 352 659 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1778 Glsi-ChrGlsi03 79606297 79609221 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1778 39 691 Receptor kinase-like Gene Family AT4G05200 51.036 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g1778 PK_Tyr_Ser-Thr 1.2e-47 CL0016