Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1773 ATGTCATGTCATTTTCGTGCCGACCCAATCTTAGGACGACTTTTGGTTCGCCTTTCTTTATTTTCCACAACCAAAACTCACGTTAATCTCAGCTTCGCCATTAATCGCCTCTCTGGCGGGGCAAACCACGTGCAAATATTTACCTCCTCAGATAATGCTCTGCCCCGCTCGCCATTACAAAACACGGGGAAAACTCCACCAGATGGCCCGACTTTCCTTTATGAGAACTGCACGAGCAATGAAACTTTCAGTGCAAACAGCGTCTTCCAATCAAACCTCAGGACCCTCTTCTCTTCCTTAACTTCCAACGCCACCGACAACTCCGGATTCTACAACACCACCATCGCCGCCGGAAACCACTCCGATGCAGTCTATGGACTCTTTATGTGCCGAGGTGACGTCACCCCTGATGTCTGTAGAGGATGCGTTTTGAACGCAACCCGAAAACTGGGGGGTCAAGGCTCAGACCCTTGCCGGTTTTCTAAGGTAGCTATAATATGGTATGATGAATGCATGGTTCGCTATTCCAACCGGAATTTCTTCTCCACCGTGGCTACAAGACCTAGATTGGGTCTGTTGAACACCGGGAATATCTCCGATTCAATGAAAGAAAGCTTCATGCGTTTACTGTACGTCACCTTGAACGAAACGGCAGATAAGGCAGCGAATACTCCTATAGGGGTTAAGAAATATGCGACAAGAACGGCTTCCCTGGCACCAACCCCTACACCAGCAGGACTTGTTCCTCCTACAACTTCTGCAAGACAGAAAGGAAAAAGTGGGATCTCATCGGGGACAATTGTTGCCATTGTGATTCCAATTACAGTGGCTGTGCTTCTGTTCATCGTGGGCATTTGTTTCTTAAGTAAAAGAGCAACGAAGAAGCGTGGGTCTGTCCAGGAAGGGAAAAGTGCAAATGACATCACCACTCTGGAGTCTTTGCAATTTGATTTCAGTACAATTGAAGCGGCCACAAACAAGTTCTCTGCAGATAATAAGCTAGGTGAAGGTGGATTTGGAGAGGTTTACAAGGGCACTCTTCCAAGTGGACAAGAAATAGCAGTGAAGAGACTCTCCCAAAGCTCTGGACAAGGTGTAGAACAATTTAAGAACGAGGTAATGGTGGTTGCCAAACTTCAACACAGAAATTTAGCGAGGCTTCTGGGATTTTGTTTGGAAGGAGAAGAAAAGATACTTGTTTATGAATTCGTGCCCAACAAAAGTCTTGACTACATTCTTTTTGACGCTGAAAAGCAAAGTGAGTTGGATTGGACAAGACGCTACAAGATTATAGGAGGGATTGCCCGAGGCATTCAATATCTTCACGAAGACTCTAGGCTTAGAATCATACATCGTGATCTCAAAGCTAGCAATGTATTATTAGACGGTGATATGAATCCAAAAATATCAGATTTTGGCATGGCAAGAATTTTTGAGCTCGATCAAACTCAAGGAAATACCAGTCGGATTGTTGGGACATATGGTTACATGTCTCCTGAATATGCTATGCACGGCGAATTCTCTGTTAAGTCTGATGTTTATAGCTTTGGAGTCCTCCTTATGGAGATTATAAGTGGTAAGAAGAATAGCTCTTTCTATCAAACAGATGGTGCTGAGGATCTTCTGAGCTATGCTTGGAAACTAAGGAAGGATGGTGCACCCTTGGAAATGGTGGACCCGACATTAAGAGGATCGTATGCTCAAAATGAAGTCATCAGATGCATCCACATTGGTTTACTGTGTGTCCAAGAAGATCCAGCAGATAGACCAACAATGGCATCAATATTACTCATGCTTGATAGTTACACTGTTACTCTGCCAACACCTAAGCGGCCTGCATTTTTTCTCCACAGTGGAACCAATCCAAACATGCCAAAGCAGTTCCGATTTGGTCAATCTACAGACAGTTCAATACCAATGTCTGTCAATGAGATGTCAGTTAGTGAAGTAATTCCACGATAA 1962 0.4434 MSCHFRADPILGRLLVRLSLFSTTKTHVNLSFAINRLSGGANHVQIFTSSDNALPRSPLQNTGKTPPDGPTFLYENCTSNETFSANSVFQSNLRTLFSSLTSNATDNSGFYNTTIAAGNHSDAVYGLFMCRGDVTPDVCRGCVLNATRKLGGQGSDPCRFSKVAIIWYDECMVRYSNRNFFSTVATRPRLGLLNTGNISDSMKESFMRLLYVTLNETADKAANTPIGVKKYATRTASLAPTPTPAGLVPPTTSARQKGKSGISSGTIVAIVIPITVAVLLFIVGICFLSKRATKKRGSVQEGKSANDITTLESLQFDFSTIEAATNKFSADNKLGEGGFGEVYKGTLPSGQEIAVKRLSQSSGQGVEQFKNEVMVVAKLQHRNLARLLGFCLEGEEKILVYEFVPNKSLDYILFDAEKQSELDWTRRYKIIGGIARGIQYLHEDSRLRIIHRDLKASNVLLDGDMNPKISDFGMARIFELDQTQGNTSRIVGTYGYMSPEYAMHGEFSVKSDVYSFGVLLMEIISGKKNSSFYQTDGAEDLLSYAWKLRKDGAPLEMVDPTLRGSYAQNEVIRCIHIGLLCVQEDPADRPTMASILLMLDSYTVTLPTPKRPAFFLHSGTNPNMPKQFRFGQSTDSSIPMSVNEMSVSEVIPR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1773 653 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524
Glsi03g1773 653 ProSiteProfiles Protein kinase domain profile. 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1773 653 CDD STKc_IRAK 334 600 - -
Glsi03g1773 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Glsi03g1773 653 Gene3D Transferase(Phosphotransferase) domain 1 404 607 - -
Glsi03g1773 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 70 179 - -
Glsi03g1773 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 28 649 - -
Glsi03g1773 653 Pfam Protein tyrosine and serine/threonine kinase 330 596 IPR001245 GO:0004672|GO:0006468
Glsi03g1773 653 SUPERFAMILY Protein kinase-like (PK-like) 313 620 IPR011009 -
Glsi03g1773 653 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 289 403 - -
Glsi03g1773 653 Gene3D Phosphorylase Kinase; domain 1 289 403 - -
Glsi03g1773 653 SMART serkin_6 328 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1773 653 ProSiteProfiles Gnk2-homologous domain profile. 71 180 IPR002902 -
Glsi03g1773 653 Pfam Salt stress response/antifungal 77 177 IPR002902 -
Glsi03g1773 653 Gene3D - 70 180 IPR038408 -
Glsi03g1773 653 FunFam cysteine-rich receptor-like protein kinase 10 404 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1773 Glsi-ChrGlsi03 79583512 79587945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1773 249 653 Receptor kinase-like Gene Family AT4G05200 62.010 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g1773 PK_Tyr_Ser-Thr 2.3e-48 CL0016