Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1770 ATGATCACCACTAAAGCAGACGAAGATCTAGAGTCGTATTATTGTCCAAACACAACCACTTTCTCTCCCAATACTACTTACCAAACCAATCTCAATGAACTCCTCTCTTCGCTTTCTTCAAATTCCCACCGTGACAACGGCTTCTACAACACCACCTCTGGCGTCACCGACCCCGCCGCCAACACCGTCTACGGAGCCTTCCTCTGCCGCGGAGACCTCACCGCGGATGAATGCGGAGATTGTGTTTCCACCGCAGCTAAAGAAGTGCTTCAACTATGTCCTGTAGAAAAGGACACAGTCATTTGGTACGAAAATTGTATGTTACGCTACGCGGACCGTTCTTTCTTCTCTACCATTGAACAATATCCCACCCGTGTTACGGTTAATATGTATAATGTCCCCGAGTCGGAGCGGAACCGGTTTACGCAGGAGTTGCGTGACACCATGAAGGCAACGGCGACGGAAGCATCAAATGGTGGAGCTGACAAGAAATTTGCTACCAGAGAAGCAAACTTCCCCGGCTTCCAAAATCTGTACACGCTTGCACAGTGCACCCCAGACTTGTCTGTCGTAGATTGCGATCACTGCCTGGCAGAAGCAATTGCAAAGTTACCCGATGGAAGACCAGGAGTAAGGATCAATAACCCCAGTTGTCGTATTAGGTACGAAATTTTCCAGTTTTACAACCAGCCAGCAGTGCCTACACCAGAACAACCAGGTCCAAAAGGAAGACAAAAAGGCCAAGACTCAAGGACTATTGTGGTGGTTGTTGTGGTTTCTGTTGTCGTTGCGGGGATACTTTTTTGTTTCGCCTACTGTTTCTTATGGACTAAAATGAAGAAGAGTTACAAGGCTGTTCTCCAAGAAAATTGTACTCAAAAGAGAAGTGTATTAAATTGGTCAGAGTGTTATCAAATTATAGGAGGAATTGCTCAAGGAATTCTTTATCTTCACAAGTATTCTCGTCTTAAAATAATACACCGAGATCTCAAACCTAGCAACATTTTATTAGATGACAACATGAATCCAAAAATATCTGATTTTGGCATGGCCAAAATAGTTGGTATTGATGAAGACCAAGGAAGCACGAATAGAGTTGTTGGAACATTGTTTGGAAGCAATGGAGGGATGAAAAATGGTTAG 1143 0.4436 MITTKADEDLESYYCPNTTTFSPNTTYQTNLNELLSSLSSNSHRDNGFYNTTSGVTDPAANTVYGAFLCRGDLTADECGDCVSTAAKEVLQLCPVEKDTVIWYENCMLRYADRSFFSTIEQYPTRVTVNMYNVPESERNRFTQELRDTMKATATEASNGGADKKFATREANFPGFQNLYTLAQCTPDLSVVDCDHCLAEAIAKLPDGRPGVRINNPSCRIRYEIFQFYNQPAVPTPEQPGPKGRQKGQDSRTIVVVVVVSVVVAGILFCFAYCFLWTKMKKSYKAVLQENCTQKRSVLNWSECYQIIGGIAQGILYLHKYSRLKIIHRDLKPSNILLDDNMNPKISDFGMAKIVGIDEDQGSTNRVVGTLFGSNGGMKNG 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1770 380 ProSiteProfiles Protein kinase domain profile. 150 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1770 380 Pfam Protein kinase domain 285 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1770 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Glsi03g1770 380 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 8 115 - -
Glsi03g1770 380 ProSiteProfiles Gnk2-homologous domain profile. 9 115 IPR002902 -
Glsi03g1770 380 Pfam Salt stress response/antifungal 15 112 IPR002902 -
Glsi03g1770 380 Pfam Salt stress response/antifungal 136 223 IPR002902 -
Glsi03g1770 380 Gene3D - 8 115 IPR038408 -
Glsi03g1770 380 Gene3D - 124 227 IPR038408 -
Glsi03g1770 380 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 7 238 - -
Glsi03g1770 380 Gene3D Transferase(Phosphotransferase) domain 1 283 371 - -
Glsi03g1770 380 FunFam Cysteine-rich receptor-like protein kinase 25 123 227 - -
Glsi03g1770 380 FunFam Os07g0541700 protein 279 369 - -
Glsi03g1770 380 ProSiteProfiles Gnk2-homologous domain profile. 121 227 IPR002902 -
Glsi03g1770 380 SUPERFAMILY Protein kinase-like (PK-like) 294 370 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1770 Glsi-ChrGlsi03 79541909 79545041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1770 293 369 Receptor kinase-like Gene Family AT4G05200 67.532 1.26e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi03g1770 Pkinase 4e-16 CL0016