Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1759 ATGCTTCTAGAATCGGACTCAGGATCCATTATGGAACAAACATTTCTGCGGCACGCTCGTGTCTTACTAGTGGAGAAGATACCTCATCGCATTCCCCTTATTAACATGGATGTGATCTTTGAGCCCCAGAGAGGACGGCCATTCTCCATTGAACTGGGTTTCTTCGATACAGTTCTAGAGATAAAAGAGAAGATTCAGAAATACCAGGGCATACCCATTTCCAAGCAGACTCTAATCTTCAATGGCCAACCTCTCCGAGACGATGGCGACATTGAAAAATGCGAAATCCTTCATAACTCCCGCATTCAGCTCCTTATTGCCGCCCCGGATTCCGTCAAGACAGAGGAGCTGTCGTCGTCGCCGGCCAAGAAATTGCAGCTCAACGTGAAAACCCCTTCGTCGAAAATGCTCGTTCCTGTGGAAATGGACGTAAACGACACCGTCTTGAAGTTGAAGGAGAGGATCCAAGACATGGAAGCCGTACCAGCTAATAGGATGGTGTTACATTTGGCTGGAACCGAATTGCACGACCATCAGACGCTTCGAGACTGTGAAATTCCAGAGAGCTCTGAGATCGACGTCAGTTTGAAACCATCGCCCACCTCTTCGGGCACGGCAAGTGGGGGTGGCGGTGGAGGGTCGAAGAAGTTGAAGGTGATGGTGTTGCCAAAGTGCGGGACGAAGAAGATACCGGTGGAGGTGAATGCGTGTGATAGCGTGGGAGAGTTGAGGAAGGAATTGCAGAAGATGCATCAGAGGTTTCAGTTTCAACTTCCATCGGAGGGTTATTTCTTCATCTACAAGCAGATTGTAATGGATGATGATAGGTCCTTCAGGTGGCACCAAGTTGGACAGGGTGATACCATTGAAATCTTCAATGGAAGCGTTACCGCCCCCCCTGGCCTCACTTTTCATCACAATTTGATTCTTCTCGTTTTGTTTCAGAGATTAGAAAGCCCTAGCAAATCAAACTCTTTCAAGATGCAAATCTTCGTCAAAACCCTCACTGGCAAGACCATCACTCTCGAAGTCGAGAGTTCGGACACCATAGACAACGTCAAGGCAAAGATTCAAGACAAGGAAGGGATCCCACCGGACCAGCAGCGTCTCATCTTCGCCGGTAAGCAACTTGAGGACGGTCGCACCCTTGCCGATTATAACATCCAAAAGGAATCGACCCTCCACCTCGTCCTCCGTCTTCGCGGTGGTATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGAGCTCCGACACCATTGACAACGTGAAGGCTAAGATCCAAGACAAGGAGGGCATCCCACCGGACCAGCAGAGGCTGATATTCGCTGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCCGATTACAACATCCAGAAGGAGTCAACGCTCCACCTTGTGCTCCGTCTCCGTGGAGGTATGCAAATCTTCGTTAAGACCCTCACCGGGAAGACCATCACCCTCGAGGTGGAGAGCTCCGATACTATTGACAACGTAAAGGCCAAGATCCAAGATAAAGAGGGCATCCCACCAGACCAGCAGAGACTCATCTTCGCAGGCAAGCAGCTTGAGGATGGCCGAACCTTGGCGGACTATAACATCCAGAAGGAATCGACCCTACACCTTGTATTGCGTCTTCGTGGTGGAATGCAAATTTTTGTTAAGACCCTTACGGGCAAGACAATCACTCTGGAGGTGGAGAGCTCGGACACAATTGACAACGTGAAGGCTAAGATTCAGGATAAGGAAGGCATACCCCCCGATCAGCAGAGGTTGATTTTCGCTGGCAAGCAGCTTGAAGATGGACGTACCCTGGCAGACTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGTCTCAGGGGAGGTATGCAGATCTTCGTGAAGACCTTGACGGGCAAAACCATTACTTTGGAGGTGGAAAGCTCAGACACGATTGACAACGTCAAGGCTAAGATTCAGGATAAGGAGGGCATACCCCCAGACCAGCAGAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGTACCCTGGCAGACTACAACATTCAGAAGGAGTCCACCCTGCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGGAAAACCATTACTCTGGAGGTTGAGAGTTCGGACACCATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAAGGAATCCCACCAGACCAGCAGAGGTTGATCTTTGCGGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTACAACATTCAGAAGGAGTCCACCCTTCACCTTGTGCTGCGTCTTCGTGGTGGATTCTGA 2355 0.5006 MLLESDSGSIMEQTFLRHARVLLVEKIPHRIPLINMDVIFEPQRGRPFSIELGFFDTVLEIKEKIQKYQGIPISKQTLIFNGQPLRDDGDIEKCEILHNSRIQLLIAAPDSVKTEELSSSPAKKLQLNVKTPSSKMLVPVEMDVNDTVLKLKERIQDMEAVPANRMVLHLAGTELHDHQTLRDCEIPESSEIDVSLKPSPTSSGTASGGGGGGSKKLKVMVLPKCGTKKIPVEVNACDSVGELRKELQKMHQRFQFQLPSEGYFFIYKQIVMDDDRSFRWHQVGQGDTIEIFNGSVTAPPGLTFHHNLILLVLFQRLESPSKSNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 325 403 IPR029071 -
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 506 531 IPR019954 -
Glsi03g1759 784 Gene3D - 216 293 - -
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 707 783 IPR029071 -
Glsi03g1759 784 PRINTS Ubiquitin signature 359 379 IPR019956 -
Glsi03g1759 784 PRINTS Ubiquitin signature 338 358 IPR019956 -
Glsi03g1759 784 PRINTS Ubiquitin signature 380 401 IPR019956 -
Glsi03g1759 784 Gene3D - 110 203 - -
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 658 683 IPR019954 -
Glsi03g1759 784 FunFam Polyubiquitin 3 328 403 - -
Glsi03g1759 784 FunFam Polyubiquitin 3 556 631 - -
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 631 707 IPR029071 -
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 555 631 IPR029071 -
Glsi03g1759 784 Gene3D - 35 105 - -
Glsi03g1759 784 CDD Ubl_ubiquitin 556 631 - -
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 62 87 IPR019954 -
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 403 479 IPR029071 -
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 734 759 IPR019954 -
Glsi03g1759 784 SMART ubq_7 556 627 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 632 703 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 328 399 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 36 107 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 708 779 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 404 475 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 125 197 IPR000626 GO:0005515
Glsi03g1759 784 SMART ubq_7 480 551 IPR000626 GO:0005515
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 354 379 IPR019954 -
Glsi03g1759 784 MobiDBLite consensus disorder prediction 194 209 - -
Glsi03g1759 784 FunFam Ubiquitin-like superfamily protein 36 107 - -
Glsi03g1759 784 FunFam Polyubiquitin 3 480 555 - -
Glsi03g1759 784 CDD Ubl_ubiquitin 404 479 - -
Glsi03g1759 784 FunFam Polyubiquitin 3 404 479 - -
Glsi03g1759 784 FunFam Polyubiquitin 3 632 707 - -
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Glsi03g1759 784 MobiDBLite consensus disorder prediction 191 215 - -
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 120 203 IPR029071 -
Glsi03g1759 784 Pfam Ubiquitin family 558 629 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 710 781 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 127 198 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 406 477 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 482 553 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 634 705 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 330 401 IPR000626 GO:0005515
Glsi03g1759 784 Pfam Ubiquitin family 43 107 IPR000626 GO:0005515
Glsi03g1759 784 CDD Ubl_ubiquitin 708 783 - -
Glsi03g1759 784 Gene3D - 557 631 - -
Glsi03g1759 784 Gene3D - 632 707 - -
Glsi03g1759 784 Gene3D - 404 479 - -
Glsi03g1759 784 Gene3D - 321 403 - -
Glsi03g1759 784 Gene3D - 708 784 - -
Glsi03g1759 784 Gene3D - 480 556 - -
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 328 403 IPR000626 GO:0005515
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 582 607 IPR019954 -
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 480 555 IPR000626 GO:0005515
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 404 479 IPR000626 GO:0005515
Glsi03g1759 784 PANTHER UBIQUITIN 126 199 - -
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 632 707 IPR000626 GO:0005515
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 35 109 IPR029071 -
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 218 292 IPR029071 -
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 125 197 IPR000626 GO:0005515
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 556 631 IPR000626 GO:0005515
Glsi03g1759 784 SUPERFAMILY Ubiquitin-like 479 555 IPR029071 -
Glsi03g1759 784 CDD Ubl_ubiquitin 632 707 - -
Glsi03g1759 784 ProSiteProfiles Ubiquitin domain profile. 708 783 IPR000626 GO:0005515
Glsi03g1759 784 FunFam Polyubiquitin 3 708 783 - -
Glsi03g1759 784 CDD Ubl_ubiquitin 328 403 - -
Glsi03g1759 784 CDD Ubl_ubiquitin_like 127 194 - -
Glsi03g1759 784 ProSitePatterns Ubiquitin domain signature. 430 455 IPR019954 -
Glsi03g1759 784 CDD Ubl_ubiquitin 480 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1759 Glsi-ChrGlsi03 79468562 79473297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1759 708 784 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 6.44e-45 155