Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1749 ATGGCTACCCACCAATCTCTGCTAGACAAACCCCAGAAGTCCATTTCCAAAACCATCTGGCTAATCCTCTCAGTAGCAGCTATCATAAGCTCATCAGCCCTTATTGCTTCTTATCTGATCAAACCCACCTCCTTCTTCAACCTTTCCCTCCCTCACCATCACCATGTCTGTGAACGTGCCCTTGACAAAGAATCATGCTTGACCCATCTCTCAGAAGTAGCCAAAGGTTCAACCTTTACCACAAAAGATCACAAACTCAAATTGCTCCAATCCTTCCTAACGAAATCCACCTCACAAATCCAGAATGTTATAAACACAGCCAAATCCATCAAATCTAGAATTAACAGTCCAAAGGAGCAACAGGCCTTGCTTGTTTGTGAGGAGCTTCTTGACTTGTCCATCGATAGAATTTGGGACTCAATGGTGGCTCTCACAAGAAAAACTACCAAATCCCACCAAGATGCTCACACATGGCTAAGTAGTGTCCTCACTAACCATGTCACTTGCTTGGATGAACTAGAGGGGTCTGCTCGGACCCTTATGGAAGCTGAGCTCAGGGACTTGATTTCTAGAGCTAGAACCACCCTAGCCGTGGTGGTTGATCAGGTTTTGCCTTCTGAAATGGATGATGCCACCATTGATGAGCCACTGGATGGGGAATTTCCCTCTTGGGTGACAAGCAAGGATAGGAGGCTTTTGGAGGTTTCTTCAGCTAAGGATATAAAGGCGAACGTGGTGGTGGCCCAGGATGGAAGTGGGAAATTTAAGACAGTGAAGGAGGCAGTGGCATCGGCACCTGATAATGGGAAGACAAGGTACGTTATTTATGTGAAGAAGGGAACTTACAAAGAGAATGTGGAAATTGGGAGTAAGAAGAAGAATGTGATGCTGGTGGGTGATGGTATGGGCGCTACTGTAATCACTGGAAGCTTGAACTTTGTGGATGGAACTCCCACCTTCAGTACTGCCACAGTCGCTGCTGTTGGGGATGGATTCATAGCCCAAGACATATGGTTCCAAAACACAGCAGGCCCCGCGAAGCACCAAGCGGTGGCCCTCCGGGTTGGCGCCGATCAATCTGTCATAAATCGTTGCCGTATCGACGCCTTCCAGGATACTCTTTATGCCCACTCAAACAGGCAGTTCTACCGTGACTCCTTCATCACAGGCACTGTTGACTTCATCTTTGGTAACGCAGCAGTTGTGTTCCAAAAGTGCACACTAGAGGCCCGAAAGCCCATGAATAACCAGAACAACATGGTCACAGCTCAAGGACGTGTAGACCCAAACCAGAACACAGGGACTTCAATTCAGCAATGTAACATAACACCAAGCTCAGATCTTAAGCCAGTCGTGGGCACAATTCGAACCTTTTTGGGTCGCCCATGGAAGGAGTTCTCCAGAACTGTTGTTATGCAGTCATCCCTAGGTAGCCATATTGACCCAGCAGGATGGGCCCCATGGGATAAGGACTTTGCATTGAAAACTTTGTTTTATGGAGAATACATGAACAGTGGACCTGGTGCTGGAACCAGCAAGAGAGTGAATTGGCCTGGGTACCATGTGATTACAAGTGCTGCAGAGGCCAGCAAGTTCACAGTGGCTCAGCTCATTCAAGGTGGGGTTTGGTTGAGGACCACTGGGGTGGCCTTCACTGAGGGGCTTTAG 1668 0.4802 MATHQSLLDKPQKSISKTIWLILSVAAIISSSALIASYLIKPTSFFNLSLPHHHHVCERALDKESCLTHLSEVAKGSTFTTKDHKLKLLQSFLTKSTSQIQNVINTAKSIKSRINSPKEQQALLVCEELLDLSIDRIWDSMVALTRKTTKSHQDAHTWLSSVLTNHVTCLDELEGSARTLMEAELRDLISRARTTLAVVVDQVLPSEMDDATIDEPLDGEFPSWVTSKDRRLLEVSSAKDIKANVVVAQDGSGKFKTVKEAVASAPDNGKTRYVIYVKKGTYKENVEIGSKKKNVMLVGDGMGATVITGSLNFVDGTPTFSTATVAAVGDGFIAQDIWFQNTAGPAKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSFITGTVDFIFGNAAVVFQKCTLEARKPMNNQNNMVTAQGRVDPNQNTGTSIQQCNITPSSDLKPVVGTIRTFLGRPWKEFSRTVVMQSSLGSHIDPAGWAPWDKDFALKTLFYGEYMNSGPGAGTSKRVNWPGYHVITSAAEASKFTVAQLIQGGVWLRTTGVAFTEGL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1749 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 197 IPR035513 -
Glsi03g1749 555 ProSitePatterns Pectinesterase signature 2. 388 397 IPR033131 -
Glsi03g1749 555 Gene3D - 238 555 IPR012334 -
Glsi03g1749 555 Pfam Pectinesterase 244 540 IPR000070 GO:0030599|GO:0042545
Glsi03g1749 555 NCBIfam pectinesterase inhibitor domain 55 178 IPR006501 GO:0004857
Glsi03g1749 555 FunFam Pectinesterase 238 555 - -
Glsi03g1749 555 PANTHER PECTINESTERASE 26 545 - -
Glsi03g1749 555 Pfam Plant invertase/pectin methylesterase inhibitor 54 185 IPR006501 GO:0004857
Glsi03g1749 555 CDD PMEI-like_4 65 200 - -
Glsi03g1749 555 SUPERFAMILY Pectin lyase-like 242 554 IPR011050 -
Glsi03g1749 555 SMART PMEI_2 41 198 IPR006501 GO:0004857
Glsi03g1749 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 201 IPR035513 -
Glsi03g1749 555 ProSitePatterns Pectinesterase signature 1. 269 288 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1749 Glsi-ChrGlsi03 79429401 79432173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1749 3 555 Carbohydrate Esterase AT1G11580 56.506 0.0 623