Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1744 ATGCCCAATGAGATCGCGCAGAAGCCTTCCTCTTCAGTACTGTTGGGCCTATACAAGGCTTTGCTAAAGGATCGTGAAGATGAATTCAGGCCTTCCTCCGGTGATGATGTGCCGCCCCCCAGTACTGAAGAAATTGTGCAGCTTTACGAATTATTGTTGTCGGAGCTCACCTGCAATTTGAAGCCCATCATAACGGATCTTACTATCATTGCTGAGCTTCAGGTAGAGCATGCCAAGGGCATCGCTGATGCAATTTGCTCTCGGATTCTCGAGGTGCCCAGAGATATAAAGCTTCCATCACTCTATCTTGTGGACAGTATTGCGAAGAATATTGGTCAGGAATATATTAGATACTTCTCTTCACATCTGCCTGAAGTTTTCTGTGAGGCCTATAGGCAGGTTCATCCTAATTTACATAATGCTATGCGCCATCTCTTTGGCACCTGGTCAACAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTCAACTGCACTTTTCTCGAGCAGTTAATAATCGATTATCCAGCAATAATCCCCTCAGGGTGTCGGAATCTCCTCAAGCAACTCATGGCATACATATTAATCCAAAATACTTGCAGCAGTTGGAACACTCAACTCTGGATAGTGTAAGCTTTTTGATGAAACCTCTTTCTTCTTCACAAAATGTGCAGGGACTGGACTGCAGCTTGATCATTAGGCAATGCCATAAGCATAATTCTAAATTCCCCAATGGCTGGAACTTTGATGTTAAGTTTGGAGGTGAAAAATTGGATTCAACAGGAAGTGTGGGTCTTACAAGTTTTGGCCTTGGAGCTAGTAAGATGCATCAACCTTTAATTAGCAGGCTTGGAAGATCTTCACCTTCAAGAATTGGAATTGATAGGCCTTTGTCGGCATCTATAAATGAATGTTCTGTTGACAATTCTGCCAGCAACATAGTTGAGAGAGAGTCTCTCTCTCATCCGGCTTTTGATTATAAAGTTGGTAAAGCATTAGTTAAGGATGAAGAGTTGAGTAGGTGGCAGCAAAAACATTATTCTGGTGATGGTCGGAATCGGCGTGAAATTTCTATGAGGTACAGCCTTGGTAATGGGCTTCAACGACAAAGTCTAAGAGCTCTAATTGATGCATATGGCAGTGATAAAAGAAAAGAAACTTCAAGCAACCAGCCTTTGTTGGTTGAACGGCAAGATACGAATGGTATAGACAAGGTGATGTCAACATCATGGCAGAATACTGAAGAGGGGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTAGATCATAGTAGGGACAATGATTTGTTGCCATCAACTACTGGTGTCTCGAAGGAAGGGCTTGTTATTGGTGCAGCTAATGGGGCTACTTCAGAGCAGGATAGTGGGAGCAGTTGGTATAGTTGGCCTCAGATTCCACCAATGGATGATTCTTCTGTTATAGCGGGAGGTTCTTTTGTTTCTTCAAGTTATGGTCGTGGATCACCAGTTCAGGTATCGGGATTCCAAACTCAGAAAAAACAGAGTTTAAGCTCCCTTCATCCTTACGATACTTGGAAGATTTCTCATCATTCATTTAATTCTTCACAACAGCTCTTTAGTATTAGAGAACGAGCAAGGAATCTTCAGATGTCTCCTGTTGGTAACTTTCCAATTACTGATGTAAACCAATATGGGACTAGGCCTGCCTTGTCAAGAATGGGTTCTGGTCTTGAGTCTAATGTGGAGAAGTGTCCACCAGATTTACCAGCATCTCTTCCAATGAGGCCCCCTGTTAATGTGCATGCTACTCGTCCACCACCCTTAAATCCTATTTTTCCATTGGAAAAACATGTTAGGAGTCAGTTTGAATTAATAAATGATAGTAGCACCATTGTAAATTATGGTCCACATAAATCTCCATTTATGCCTGAGCAACTGTTGGACCGTGTTGAGAACAAGGATATGGATAAATCAAAGCTACATCAGTTGCCTAATCAGCTAGCTGGCCAGCAAAACCGTGAAGCACCACAGCCACAATTTTTTCCATCTCGGAATGTGCAAGAAAATTTCCTTGGATCACAAGCTCCAGCAGCTTTGCAATCTAGTCTTGGGAGCTCTTTGCAAAGACATAGTGCTGCTATAAGTACAGCCATGCCAAATTCGTTTCCTGTTGCACATTTCCCTTTTCCTGTCCAAAACATTGCAAATAACTCTTTTAGTTTGTGGGGGGGATCCTTACGTCCAGTCCTCCATCCTGCTCTACCACTAACAATACCTCATCCAAATGCTGGTCTGATTGTGTCAAGCCAACAGCCAGGTGGTGCATCTTCTGATTTAATTAATTCACTTATGGTTCAAGGTTTGATCTCATTGACTAATCAACCCCCTGGACAGGATTCTGTTGGAACTGAGTTCAATCCAGATGTTCTAAAGAATCGTCATGAGTCTGCAATCAGTGCCTTGTATGGTGATCTCCCTAGACAATGCACAACTTGTGGGCTCCGATTCAAGTGCCAAGAGGGGCACAGTAATCATATGGATTGGCATGTGACTAAGAACCGGATGTCTAAAAACCATAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAAGCATTGGGAACAGAATCAGTTCCTGGTTTTTTGCCAACTCAGACGGTAGAGGAAAGGAAAGATGATGAAGAGTTGGCCGTGCCAGCTGACGAGGAACAGAACACATGTGCATTATGTGGTGAGGCCTTCGATGAGTTTTACAGTGATGAAACAGAGGAATGGATGTACAGAGGAGCTGTATATCTCAATGCATCCAAGGGAACAACAGCAGGCATGGATAGGTTGCAGTTAGGTCCCATTGTTCATGCTAAATGCAGATCTGAGTCTAGTGTTGTCCCTTCAGAAGATTTTGGGCAGGATGAAAGGGGCACCGATGAGGAGGGTAGTCAAAGAAAACGAATGCGGAGTTAA 2973 0.4329 MPNEIAQKPSSSVLLGLYKALLKDREDEFRPSSGDDVPPPSTEEIVQLYELLLSELTCNLKPIITDLTIIAELQVEHAKGIADAICSRILEVPRDIKLPSLYLVDSIAKNIGQEYIRYFSSHLPEVFCEAYRQVHPNLHNAMRHLFGTWSTVFPPSVLRKIEAQLHFSRAVNNRLSSNNPLRVSESPQATHGIHINPKYLQQLEHSTLDSVSFLMKPLSSSQNVQGLDCSLIIRQCHKHNSKFPNGWNFDVKFGGEKLDSTGSVGLTSFGLGASKMHQPLISRLGRSSPSRIGIDRPLSASINECSVDNSASNIVERESLSHPAFDYKVGKALVKDEELSRWQQKHYSGDGRNRREISMRYSLGNGLQRQSLRALIDAYGSDKRKETSSNQPLLVERQDTNGIDKVMSTSWQNTEEGEFDWEDMSPTLVDHSRDNDLLPSTTGVSKEGLVIGAANGATSEQDSGSSWYSWPQIPPMDDSSVIAGGSFVSSSYGRGSPVQVSGFQTQKKQSLSSLHPYDTWKISHHSFNSSQQLFSIRERARNLQMSPVGNFPITDVNQYGTRPALSRMGSGLESNVEKCPPDLPASLPMRPPVNVHATRPPPLNPIFPLEKHVRSQFELINDSSTIVNYGPHKSPFMPEQLLDRVENKDMDKSKLHQLPNQLAGQQNREAPQPQFFPSRNVQENFLGSQAPAALQSSLGSSLQRHSAAISTAMPNSFPVAHFPFPVQNIANNSFSLWGGSLRPVLHPALPLTIPHPNAGLIVSSQQPGGASSDLINSLMVQGLISLTNQPPGQDSVGTEFNPDVLKNRHESAISALYGDLPRQCTTCGLRFKCQEGHSNHMDWHVTKNRMSKNHKQKPSRKWFVSERMWLSGAEALGTESVPGFLPTQTVEERKDDEELAVPADEEQNTCALCGEAFDEFYSDETEEWMYRGAVYLNASKGTTAGMDRLQLGPIVHAKCRSESSVVPSEDFGQDERGTDEEGSQRKRMRS 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1744 990 ProSiteProfiles CID domain profile. 41 169 IPR006569 -
Glsi03g1744 990 FunFam polyadenylation and cleavage factor homolog 4 38 166 - -
Glsi03g1744 990 SUPERFAMILY ENTH/VHS domain 40 171 IPR008942 -
Glsi03g1744 990 MobiDBLite consensus disorder prediction 960 990 - -
Glsi03g1744 990 ProSitePatterns Zinc finger C2H2 type domain signature. 824 844 IPR013087 -
Glsi03g1744 990 CDD CID_Pcf11 46 166 IPR047415 -
Glsi03g1744 990 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 39 978 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Glsi03g1744 990 Pfam CID domain 61 160 IPR006569 -
Glsi03g1744 990 Gene3D - 38 166 IPR008942 -
Glsi03g1744 990 SMART 558neu5 44 166 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1744 Glsi-ChrGlsi03 79396951 79403236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1744 653 990 C2H2 Transcription Factor Family AT4G04885 53.623 2.80e-107 350