Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1733 ATGAGTTGCTTCCCATGTTGCAAGTCTGATGTTGAAACGGGGCTTTTCACAAAAAGCCCCGCGACATTTTCCAAAGTCAGGAAGAGCACATTCAAATCTGTTTTGGGAGCCGCTATCTCAGTTAAAACAGGGAGCAGCAGGCAAAAATATATTACTGCTGAGATACAAAAACATGGAACTGCAATAAACGATGTTAAAGTATTCTCATATGAAGAACTAGCGGCTGCAACAGACAACTTCAATCCTGATTGTCTGGTTGGCGAAGGTGGATTTGGTTGTGTCTACAGAGGATACATACCCAGCCTTAATCAAGCTGTAGCTGTGAAGCAACTGGAGAGGAAACGAAGGCAAGGCACTACAGAGTTCTTTACAGAGATTATGCTGTTAAGTTTGGTGAACCACCCAAACATTGTCAAGCTAATAGGTTATTGTGCAGAAGAAGATCAGAGGATTTTAGTTTATGAATTCATGTCCAATGGAAGTTTGGAAAGTCAACTTCTAGACTTAGCCCCAGATAAGGAGCCTCTAGATTGGCGTACCAGGATGAAAATAGCAGAAGGAGCAGCTAGAGGACTTGAATATCTGCATGACATTGCGGATCCACCAGTTATCTACAGAGACTTCAAAACATCTAATATCTTACTAGATGAAAACTATAATCCAAAGCTCTCGGATTTTGGACTAGCCAAGCTGGGTCCAACAGAAGGCAATGACCACATCACCACAACGGTTATGGGGACCTATGGCTACTGTTCACCCGAGTATGCTTTAACAGGCCAGCTAACCACAAAGTCAGATGTTTATAGTTTCGGCGTTGTTTTCTTAGAAATAATCACAGGGAGAAGAGCCATCGACAATAACAGAGTGACAGAGGAGCAAAATCTCATTAATTGGGCACAGCCTCTGTTTAAGGACAGAGAGAAGTTTAGTTTAATGGCAGACCCATTGATTAAAGAGGAATTGCCAGTGAAGAGTCTATTTAAAGCTCTGGCAGTGGCAGCAATGTGTCTGCAAGAGGAAGCTGATACGAGACCTTTGATGGGTGACGTTGTAACATCTCTTGAGCATTTATCAGTACCAACATTTGGAGAAAAATACGCCAAAGCTGAATCCATAAGAAGTGCTGGCCATATTGAATCATTTAGAGTTTCAAGTTCACGTTCACGTGCAGACCAATAG 1179 0.4224 MSCFPCCKSDVETGLFTKSPATFSKVRKSTFKSVLGAAISVKTGSSRQKYITAEIQKHGTAINDVKVFSYEELAAATDNFNPDCLVGEGGFGCVYRGYIPSLNQAVAVKQLERKRRQGTTEFFTEIMLLSLVNHPNIVKLIGYCAEEDQRILVYEFMSNGSLESQLLDLAPDKEPLDWRTRMKIAEGAARGLEYLHDIADPPVIYRDFKTSNILLDENYNPKLSDFGLAKLGPTEGNDHITTTVMGTYGYCSPEYALTGQLTTKSDVYSFGVVFLEIITGRRAIDNNRVTEEQNLINWAQPLFKDREKFSLMADPLIKEELPVKSLFKALAVAAMCLQEEADTRPLMGDVVTSLEHLSVPTFGEKYAKAESIRSAGHIESFRVSSSRSRADQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1733 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Glsi03g1733 392 Gene3D Transferase(Phosphotransferase) domain 1 157 372 - -
Glsi03g1733 392 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 52 156 - -
Glsi03g1733 392 ProSitePatterns Protein kinases ATP-binding region signature. 86 109 IPR017441 GO:0005524
Glsi03g1733 392 PANTHER OS07G0668900 PROTEIN 27 361 - -
Glsi03g1733 392 SUPERFAMILY Protein kinase-like (PK-like) 65 362 IPR011009 -
Glsi03g1733 392 CDD STKc_IRAK 86 357 - -
Glsi03g1733 392 Pfam Protein kinase domain 85 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1733 392 ProSiteProfiles Protein kinase domain profile. 80 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1733 392 Gene3D Phosphorylase Kinase; domain 1 50 156 - -
Glsi03g1733 392 FunFam Serine/threonine-protein kinase PBS1 157 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1733 Glsi-ChrGlsi03 79306708 79309578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1733 66 363 Glycoside Hydrolase AT3G07070 62.081 1.67e-135 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi03g1733 Pkinase 5.7e-47 CL0016