Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi03g1727 | ATGGATGGCGATGAACCTCCTTGTCCATCACCGTACGTTTCTTCTGCTTCGCTTCTCAGGGACATCTCCAATTTCAGAACTCCGAAACGCCCCTCTCACAACCTCAATCTCCAATCCCCTTGCCCTCAGTTCTTCACCGCTTCTAAACAAACACCGCGCTCCTCGGCTTTTCGTCGCCGGCCATCTATCGCTCCGCCGTCTTCAGCTCGTACCAAGAAGTCTGCGGCAGCGGCCAGGAAACTCAAGGCATTCGAACTCGAGCAGTCTCAGTCCTCTAGAAAGGCTCAAATGAAAAAAGAGCAGTCTCTTAAATCGCTAGCCAAGTCCATCACTGTTTGGCTTAATTTTTTGTTTGAAAACCCCGGGACGTGCGGCTGTGACTTGTCCATCGCGGGAGTCCAGATTGGGGATGCGGATTCTGCAGTGATGGTGACAAAAGGGAAGAGGGATAGCGGTCCTGGGATTTCCATTGGGGCTGATAAGGCCTGGCGTACTCCGAAGCGGCAGCGGAAAATGTGGTCGGAGGCTGAGGGCCGTGATGGCAAGGAAAATGCAGCAGGGGAGTTGCCAAGTTCTATGATTTTGCACTTGAGGGATTCTCTAAAGGATGTCTGCAGTTTTGATGATTTGAATCAGCGAATGAGGGTTTATCTGAACTTGGGAAGTTGCAAAGAGATTTTTGAAGTCATGAATCAAGTAACAAAGAATATTGATGAAGGAAGGTTAAAATTGAAGCCACATTGCCCAATAGTAACAGATGTTGGATTGAAAAATATCGCCACAAGAATCCTAATGTGTTATAATTCAATTTGGCTCCGAATTGGATTATATATAATTTTTGGTGGTGACTCTTTGGTGTCAAACGGAGATGTTGATTCTGAACAAGAAATCACATTTTTGAAAATGGTCATTGAGAAGCAATTTTTTTCACATGCGGGTCTAGCAAAAGCATATGCTTATAACAAGATGGTTGAAGGCCTATATAGACCAGGATACTATGAGAATTTGGGCAATGTGGTCTTAAAGAGAATTTTGTTGCTTGTGCTTTTCCTGGATAGAGCTAAATGTCAGAGTTGTCTTTCACTTAAGTATGGTATTGATGGACTTGATGGGGGTTCCCCTTTATTGTTCAAGGCAGAATCTTGGATCAAATCAAGTAGTCAAGTGATCCATGAATTCCTATCGTCAGATGTAATGCACGGAGAAGGAAATCTTCTGGCACATTTAGTGATTATAGGGTACAAATTATCTTATCAACAGGGGCCTCTTGTCGAGTATGAATTCAGGGTCAAAGATTTATTTGTAGATCTCCAAGATGGATTAAAGCTATGTAGAGCTATTCAGCTTTTGCAACATAATTCTTCTATCCTCACGAAAATTGTAGTTCCCTCAGATACTTATAAGAAGAATTTGGCAAACTGTGGTCTTGCCTTGCAATACCTTAGGCAAGCTGGCGTGTTGCTACATGATGAGGATGGCATGATGATTGTGGCAGATGATGTCGCCAATGGAGATAAAGAACTTATTCTCTCATTGCTGTGGAATATGTTTGTTCACTTGCAGCTACCTCTTTTGGTCGACAAAACAAGTTTATTGGAGGAAATTGGTAAAATTCGAGGACTTGGCATGGTTCTCATTGACAGTGCAAATTCTAGTTCATTGGAATTGCTTTTGAATTGGATTCAGGCAGTTTGTAAAAATTATGATTGTGAAATTGACAATTTTCATTCGCTAGCTGATGGCAAAGCTATCTGGTGCTTACTTGATTATTATTTCCAGAAGGAACTTCATAATTCCTGTTCATTGAAGGAAGTTAACAAGAAAGTTGGCAAGGAATCAATAATGTCTGTCAATGATTATTCAGATGCAGTGTACAATTTTATATTATCACAGAAGTTGACTACATTATTAGGAAATTTTCCAGAGGTACTTCAAATTAGTGACCTACTTGAATATAATGGTGCTTGCAGTGATCGGAGTGTGGTGATATTATTGGTTTTCCTTGCAAGGCAATTATTTGTCAAGAAAAATGTGGATCAATTAAATTTCCATAAGCTCCTAGGTTGTGATTGCCAAAGTCTGTACCGGAAGCATGTGAGGATGGGGCAGTGCCTTTCAAGTTCTGAAGCAGTACAAAAGCCAGACGCTTCGGATCTGCATGACAGTGAAGATGCTGCAAGAAAATTTAAGGCCATCCAGGCTTGGTGGCAAGATATGGCTGAACGAAATCATAAATCATTCATGAAACCAGCTGCGTGCAGAACCATTCCATGTAGCACCAACGTTAGAAGAGAAACTGCTGCAATAACAATACAATCACATTTCAGACGATTAGTTGCTCGTCGCATGTTTCTCAAGTTGGTGAATGCCGTCTCCCTTTTGCAAACCATTTTCCGAGCTTGGCTAGAAGTGAGACAGGAGTCATCATTCACCATTGTTCATGACCAAAACTTATCATGTGCAACACGGAAGCGGCCCGAAACATATAGGAGATATGCCATGTTTTTCGTTCACAGGCATTCTTTTTTGAAGTTAAAGAGGTCCGCACTGGTTATCCAGCAAGCAGTGAGGAATTGGATCTCTTGGAGGCATCAGCAGGGAAGCAATATAATTCCTAATCTTACAGATTCAGATCCTGTGGCTGCTGCCACTATTGTTCAGAAATTTGTTCGTGGCTGGATGGCACGATCTACATATATTCGCCAGCTTGAGCAGAAAGAGAGAGCTTCAAATATATGCCAACAAAAGGTTACGTTTGATCTTCAAACAAAAGCAGCCATCATGATTCAGCATGCTTGGAAGAAGTATATATGCTGCAAGTCTACTCAGAAGCACTTCTTTGCGACTAAGATTCAATGTAATTTTCGTAGATGGCTGTTAAGAAAAAGATTTTTGAATCAGATTCAAGCTGTCTTGAGAATTCAATGTTATTTTCGAATGTCGAGATGTGTAAAGATGTTTCAACACTTCAAAATTTCATATAAGGCAGCTATTGTAATTCAGTCTTTTGTACGTGCATGGATTGCAAGGAAAGAAGCTTATGCTCGTAGAAATCACATCGTTGCAATTCAAACGCATTGCCGTTGCTGGCTGGCGAAAAGGGACTTCTTCTTCCAAAGAGAAGCTGCTATGAAGATCCAAAGTGTCATTCGAAGTCTGAAATACCAGAAGGCTTTCAATTGTCAGAAAGATGCTGTGTTGGAGATCCAGCGTTTTATCAGGGGATATTTAACCCGAAATAGGCTATTAGGTGGTGCTTCTCGGCAGCGTGCAATCATTCCTAGTGGTTGCATTTTAAGATCAGATGGCTATTGTAGTTTTCAACTGGATCTATTCTTGTGCTCTGTTCTGAAATTGCAGCGATGGTGGAAGAGTGTTTTGTTACTTAAATTAAGGACAAAGTCTGTCATTATAATCCAGTCTTGTACTCGTGGGTGGATAGCTAGGCGAATGGCAACTGCTCGCAGACACAATATTGTTGTCATTCAATCCCGCTGGAAAGGTTACCTTGCCCGGAAAGAGTCAAAAGAGCAGCTACTGGACTTGCGCCTCAGAGTACAGAAGTCAGCCAGAAATGTGGATGATAGCAAGCGTCTCATAAACAGACTCTTAGCGGCGCTTTCAGAGCTACTTAATATGAAAAGTGTCAGCGGCATTCTTCATACTTGTGCCACATTGGATATGGCTACAAGACATTCTCAGAAATGTTGTGAAGAACTTGTGGCCGCAGGGGCTATTAACACGTTGCTGAGGCTTATTCGCTCAGTTAGCCGAAGTATACCAGATCAAGAGGTTCTTAAGCATGCCCTGTCAACTCTACGAAATCTTGCCCGCTATCCTCACCTACTAGAAGTGCTGATCCAAAGTAATGGTTCTACGGAGATAATTCTCTGGGAATTACTGAGGAATAAGGAGGACGGCTACTTTATTGCTTCTGAACTTCTTAAGAAGATATCTTCAACTCATCAAGGCGTCGAATCAATACGCAAGTTACCTGCCCTTCTAAAACGACTGCACGCTCTTGTTGAGGAGCATACAAGGAAGGCAATCTATGAGAAAAGAAATGCTAGGGGTCCAAGTCCAGTTATAAGAGAAAACAGAGAGAGAAGATTGAAGGAGGCTGCTGAGATTCTGAAACTGATATATGCCAAGCCCTAA | 4158 | 0.4194 | MDGDEPPCPSPYVSSASLLRDISNFRTPKRPSHNLNLQSPCPQFFTASKQTPRSSAFRRRPSIAPPSSARTKKSAAAARKLKAFELEQSQSSRKAQMKKEQSLKSLAKSITVWLNFLFENPGTCGCDLSIAGVQIGDADSAVMVTKGKRDSGPGISIGADKAWRTPKRQRKMWSEAEGRDGKENAAGELPSSMILHLRDSLKDVCSFDDLNQRMRVYLNLGSCKEIFEVMNQVTKNIDEGRLKLKPHCPIVTDVGLKNIATRILMCYNSIWLRIGLYIIFGGDSLVSNGDVDSEQEITFLKMVIEKQFFSHAGLAKAYAYNKMVEGLYRPGYYENLGNVVLKRILLLVLFLDRAKCQSCLSLKYGIDGLDGGSPLLFKAESWIKSSSQVIHEFLSSDVMHGEGNLLAHLVIIGYKLSYQQGPLVEYEFRVKDLFVDLQDGLKLCRAIQLLQHNSSILTKIVVPSDTYKKNLANCGLALQYLRQAGVLLHDEDGMMIVADDVANGDKELILSLLWNMFVHLQLPLLVDKTSLLEEIGKIRGLGMVLIDSANSSSLELLLNWIQAVCKNYDCEIDNFHSLADGKAIWCLLDYYFQKELHNSCSLKEVNKKVGKESIMSVNDYSDAVYNFILSQKLTTLLGNFPEVLQISDLLEYNGACSDRSVVILLVFLARQLFVKKNVDQLNFHKLLGCDCQSLYRKHVRMGQCLSSSEAVQKPDASDLHDSEDAARKFKAIQAWWQDMAERNHKSFMKPAACRTIPCSTNVRRETAAITIQSHFRRLVARRMFLKLVNAVSLLQTIFRAWLEVRQESSFTIVHDQNLSCATRKRPETYRRYAMFFVHRHSFLKLKRSALVIQQAVRNWISWRHQQGSNIIPNLTDSDPVAAATIVQKFVRGWMARSTYIRQLEQKERASNICQQKVTFDLQTKAAIMIQHAWKKYICCKSTQKHFFATKIQCNFRRWLLRKRFLNQIQAVLRIQCYFRMSRCVKMFQHFKISYKAAIVIQSFVRAWIARKEAYARRNHIVAIQTHCRCWLAKRDFFFQREAAMKIQSVIRSLKYQKAFNCQKDAVLEIQRFIRGYLTRNRLLGGASRQRAIIPSGCILRSDGYCSFQLDLFLCSVLKLQRWWKSVLLLKLRTKSVIIIQSCTRGWIARRMATARRHNIVVIQSRWKGYLARKESKEQLLDLRLRVQKSARNVDDSKRLINRLLAALSELLNMKSVSGILHTCATLDMATRHSQKCCEELVAAGAINTLLRLIRSVSRSIPDQEVLKHALSTLRNLARYPHLLEVLIQSNGSTEIILWELLRNKEDGYFIASELLKKISSTHQGVESIRKLPALLKRLHALVEEHTRKAIYEKRNARGPSPVIRENRERRLKEAAEILKLIYAKP | 1385 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 1062 | 1091 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | arm_5 | 1233 | 1278 | IPR000225 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 966 | 988 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 1154 | 1176 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 844 | 866 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 1015 | 1037 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 992 | 1014 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 786 | 808 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 1131 | 1153 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 763 | 785 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 1038 | 1060 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 943 | 965 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 878 | 900 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SMART | iq_5 | 1061 | 1083 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | Armadillo/beta-catenin-like repeat | 1233 | 1278 | IPR000225 | GO:0005515 | |
| Glsi03g1727 | 1385 | Gene3D | - | 1186 | 1379 | IPR011989 | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 763 | 810 | - | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 1130 | 1179 | - | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 1041 | 1092 | - | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 943 | 993 | - | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 994 | 1040 | - | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 415 | 521 | IPR036872 | - | |
| Glsi03g1727 | 1385 | SUPERFAMILY | ARM repeat | 1201 | 1345 | IPR016024 | - | |
| Glsi03g1727 | 1385 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 1244 | 1291 | IPR000225 | GO:0005515 | |
| Glsi03g1727 | 1385 | Gene3D | - | 880 | 941 | - | - | |
| Glsi03g1727 | 1385 | Gene3D | - | 546 | 676 | IPR036872 | - | |
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 1155 | 1183 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 1132 | 1159 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | ProSiteProfiles | Calponin homology (CH) domain profile. | 399 | 521 | IPR001715 | GO:0005515 | |
| Glsi03g1727 | 1385 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 995 | 1082 | IPR027417 | - | |
| Glsi03g1727 | 1385 | MobiDBLite | consensus disorder prediction | 23 | 73 | - | - | |
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 881 | 908 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 949 | 1014 | IPR027417 | - | |
| Glsi03g1727 | 1385 | CDD | CH_ASPM_rpt1 | 405 | 516 | - | - | |
| Glsi03g1727 | 1385 | Pfam | Calponin homology (CH) domain | 429 | 519 | IPR001715 | GO:0005515 | |
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 944 | 973 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 995 | 1012 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 948 | 964 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 767 | 782 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 1133 | 1150 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 881 | 899 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 1040 | 1059 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 1020 | 1036 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 1157 | 1174 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | Pfam | IQ calmodulin-binding motif | 1064 | 1082 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | MobiDBLite | consensus disorder prediction | 23 | 57 | - | - | |
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 764 | 792 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | ProSiteProfiles | IQ motif profile. | 993 | 1022 | IPR000048 | GO:0005515 | |
| Glsi03g1727 | 1385 | PANTHER | UNCHARACTERIZED | 39 | 866 | - | - | |
| Glsi03g1727 | 1385 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1120 | 1178 | IPR027417 | - | |
| Glsi03g1727 | 1385 | SUPERFAMILY | Calponin-homology domain, CH-domain | 327 | 595 | IPR036872 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi03g1727 | 995 | 1174 | Myosins gene family | AT5G43900 | 25.824 | 3.89e-07 | 53.1 |