Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1726 ATGGCTGGATGTGGGCCTTCCTTCATGGCCGATTTGCCAATTTGTGTATGGACAATCTCCACCCCTTTGCCCCCTTCCCTTCTCTCTCTCTCTCTATCTCTTTCTTCCTTCTCTTCCCTTCTCTCTCTGAAGTCCCAGATTTCTTTCCTCAAGATGATGCAGCCTGGGCCTGGCATGGCTCCACCAAACATGGGCCAACAACCTAACCAGCAGTATCAGCAGCAGCAACCCTACATGATGATGCCGCCGCAGGCTCAGGCGCCACCGATGTGGGCACCGTCAGCCCAGCCGCCGCCGCAGTCTGTTGCTCCACCGCAACCCACTCAAGCCGTCCAGCCCACAAGCGCGGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAGTACTGGATGGACGAGAACTATCTGTACGGTTGTTTTGCTCATACAGGCGAGGTGTCCTCTGTGAAAGTTATTCGAAATAAACAAACTAATCAATCGGAGGGTTATGGGTTTATTGAGTTTTTCACCCGCTCTGCTGCTGAGAGAATACTTCAAACATTTAACGGCACCATTATGCCAAATGGTGGGCAGAGCTTCAGACTGAACTGGGCCACTTTTAGTGCGGGTGAGAAGCGTCATGATGATACTCCAGATTACACAATATTCGTTGGAGACTTGGCCGCAGATGTCACAGATTACATGCTACAGGAGACATTTAGGTCTCGGTATTCATCAGTTAAAGGTGCAAAAGTTGTGATTGATAGACTCACTGGGAGGACAAAGGGTTATGGTTTTGTCAGGTTCGGAGATGAGAGTGAACAAATACGAGCTATGACTGAGATGCAAGGGGTTCTGTGTTCAACAAGACCCATGCGGATTGGACCAGCCACAAACAAAAACCCTGGAACTCAGCCGAAAGCTTCATATCAGAATCCTCAAGGGGCACAGAACGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCCAATGTTACAGATGAACATCTGAAGCAAGTTTTTGCCCAATATGGGGAGCTAGTCCATGTGAAGATTCCAGCAGGCAAGCGATGCGGGTTTGTCCAATTTGCTGACAGGAGCTGTGCCGAAGAGGCACTGAGGATGTTAAATGGAACTCTGTTGGGTGGACAAAATGTTCGTCTCTCATGGGGCCGTAGTCCTTCAAACAAACAGACTCAGGCAGATCCAAACCAGTGGAATGGTGGGTATTATGGATATCCTCAGGGGTATGAAAATTATGGATATGCTCCTGCAGCTGCTGCTGCTGCACAGGATCCCAACATGTATGGAAGCTATCCGGGGTATGCGAATTACCAACCACCACAGCAACAGCAGCAAATAGGATATAGTTGA 1365 0.4864 MAGCGPSFMADLPICVWTISTPLPPSLLSLSLSLSSFSSLLSLKSQISFLKMMQPGPGMAPPNMGQQPNQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPQSVAPPQPTQAVQPTSADEVRTLWIGDLQYWMDENYLYGCFAHTGEVSSVKVIRNKQTNQSEGYGFIEFFTRSAAERILQTFNGTIMPNGGQSFRLNWATFSAGEKRHDDTPDYTIFVGDLAADVTDYMLQETFRSRYSSVKGAKVVIDRLTGRTKGYGFVRFGDESEQIRAMTEMQGVLCSTRPMRIGPATNKNPGTQPKASYQNPQGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFAQYGELVHVKIPAGKRCGFVQFADRSCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQTQADPNQWNGGYYGYPQGYENYGYAPAAAAAAQDPNMYGSYPGYANYQPPQQQQQIGYS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1726 454 FunFam Polyadenylate-binding protein RBP45C 205 296 - -
Glsi03g1726 454 MobiDBLite consensus disorder prediction 82 106 - -
Glsi03g1726 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 200 IPR000504 GO:0003723
Glsi03g1726 454 Gene3D - 205 298 IPR012677 -
Glsi03g1726 454 MobiDBLite consensus disorder prediction 285 318 - -
Glsi03g1726 454 SUPERFAMILY RNA-binding domain, RBD 303 418 IPR035979 GO:0003676
Glsi03g1726 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 278 IPR000504 GO:0003723
Glsi03g1726 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 383 IPR000504 GO:0003723
Glsi03g1726 454 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 187 IPR000504 GO:0003723
Glsi03g1726 454 SUPERFAMILY RNA-binding domain, RBD 202 305 IPR035979 GO:0003676
Glsi03g1726 454 FunFam Polyadenylate-binding protein RBP45C 297 421 - -
Glsi03g1726 454 SUPERFAMILY RNA-binding domain, RBD 102 199 IPR035979 GO:0003676
Glsi03g1726 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 390 IPR000504 GO:0003723
Glsi03g1726 454 CDD RRM1_SECp43_like 121 201 - -
Glsi03g1726 454 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 110 394 - -
Glsi03g1726 454 CDD RRM2_SECp43_like 212 291 - -
Glsi03g1726 454 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 292 IPR000504 GO:0003723
Glsi03g1726 454 SMART rrm1_1 319 386 IPR000504 GO:0003723
Glsi03g1726 454 SMART rrm1_1 214 288 IPR000504 GO:0003723
Glsi03g1726 454 SMART rrm1_1 121 196 IPR000504 GO:0003723
Glsi03g1726 454 FunFam Polyadenylate-binding protein RBP45 61 204 - -
Glsi03g1726 454 Gene3D - 299 399 IPR012677 -
Glsi03g1726 454 MobiDBLite consensus disorder prediction 54 114 - -
Glsi03g1726 454 Gene3D - 59 204 IPR012677 -
Glsi03g1726 454 MobiDBLite consensus disorder prediction 63 81 - -
Glsi03g1726 454 MobiDBLite consensus disorder prediction 287 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1726 Glsi-ChrGlsi03 79267275 79272098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1726 214 407 Eukaryotic Initiation Factors Gene Family AT2G23350 24.121 4.42e-11 63.2