Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1715 ATGGGATGCCATAGTAGCAAAGAGAAAAAATCAAGGCCAGATTTTGGTGGATATGGATCATCCACAGGTGGTGTTAGTAGCCATCAAAGTTACCACACTGTTCAGTCATCTACCATTCAGACTCAGACTCAGACATCAGCATCTAAACCGCAGCCGCCAGTGGTGGCTCCACCAAAACCTGCTACCCAGAATGTCAGAGCTGTGCAGAAGCCAGAAGCTACCATACTGGGTAAACCACTTGAAGATGTTAAGCAATACTACACTCTAGGCAAAGAACTGGGTAGAGGGCAATTTGGGATTACCTATTTGTGTACCGAGAACTCCACTGGCCTCACTTATGCCTGCAAATCCATATTGAAGAGGAAACTTGTGTCTAAAGCTGACAAAGAAGATATGAAGAGGGAGATTCAGATTATGCAGCATTTGTCTGGGCAGCCCAACATTGTGGAATTCAAGGGTGCTTACGAAGACAGGTACTCAGTGCACCTTATAATGGAACTTTGTGCTGGTGGGGAGCTCTTTGATCGAATCATAGCTCAGGGTCACTATTCAGAGCGAGCTGCAGCATCAATTTGTCGAGCCATTGTTAATGTTGTGCACATTTGCCATTTTATGGGGGTGATGCATCGAGATCTAAAGCCTGAAAATTTCTTGCTTTCTAGCAAGGATGAAGGAGCAGCGCTTAAGGCAACTGATTTTGGACTGTCTGTCTTCATTGAAGAAGGGAAGGTTTACCGTGATATGGTAGGCAGTGCCTATTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAAGAAATAGATATTTGGAGTGCAGGCATTATATTGTATATTCTCCTGAGTGGTGTACCTCCTTTTTGGGCTGAAAATGAGAAAGGAATATTTGATGCTATATTGGAAGGTAAAATTGACTTTGAAAGTCAACCTTGGCCATCAATATCAGATAGTGCTAAAGATTTAGTCAGGAAGATGTTGACACAGGACCCAAAGAAGCGAATTACTTCTGCACAAGTCCTTGAACATCCATGGATCAGAGAAGGCGGAGAGGCATCAGATAAACCAATAGATAGTGCAGTTCTGTCTAGGATGAAACAATTCAGGGCAATGAATAAGCTTAAGAAGCTCGCATTGAAGGTTATTGCTGAAAATCTATCTCAAGAAGAGATTAAAGGTCTCAAAGCAATGTTCACAAATATGGACACTGACAATAGTGGCACTATCACTTATGAAGAACTAAAGACAGGCTTGGCCCGGATTGGATCACAACTGTCTGAAGCTGAAGTGAAACAACTCATGGAAGCAGCTGATGTTGATGGGAATGGATCAATTGATTATATTGAATTCATCTCGGCTACAATGCATAGGCACAGACTCGAACGAGATGAGCACTTATACAAAGCATTTCAGTATTTTGATAAGGATAACAGTGGTTATATTACTAGAGATGAATTGGAGACTGCTATGACACAGCATGGAATAGGCGATGAAGCAACCATTAAGGAAATAATTTCAGAGGTGGATACAGATAACGATGGGAGAATAAACTATGAGGAATTTTGCACAATGATGAGAAGTGGAATGCAACACCAAGGACAACTATTTTAA 1608 0.4179 MGCHSSKEKKSRPDFGGYGSSTGGVSSHQSYHTVQSSTIQTQTQTSASKPQPPVVAPPKPATQNVRAVQKPEATILGKPLEDVKQYYTLGKELGRGQFGITYLCTENSTGLTYACKSILKRKLVSKADKEDMKREIQIMQHLSGQPNIVEFKGAYEDRYSVHLIMELCAGGELFDRIIAQGHYSERAAASICRAIVNVVHICHFMGVMHRDLKPENFLLSSKDEGAALKATDFGLSVFIEEGKVYRDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAENEKGIFDAILEGKIDFESQPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWIREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSQEEIKGLKAMFTNMDTDNSGTITYEELKTGLARIGSQLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGIGDEATIKEIISEVDTDNDGRINYEEFCTMMRSGMQHQGQLF 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1715 535 ProSiteProfiles EF-hand calcium-binding domain profile. 496 530 IPR002048 GO:0005509
Glsi03g1715 535 Pfam EF-hand domain pair 463 525 IPR002048 GO:0005509
Glsi03g1715 535 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Glsi03g1715 535 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1715 535 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Glsi03g1715 535 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1715 535 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Glsi03g1715 535 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1715 535 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Glsi03g1715 535 SUPERFAMILY EF-hand 384 524 IPR011992 -
Glsi03g1715 535 PANTHER SERINE/THREONINE-PROTEIN KINASE 81 520 - -
Glsi03g1715 535 MobiDBLite consensus disorder prediction 20 50 - -
Glsi03g1715 535 FunFam Calcium-dependent protein kinase 1 89 172 - -
Glsi03g1715 535 CDD EFh_PI-PLC 393 526 - -
Glsi03g1715 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Glsi03g1715 535 FunFam Calcium-dependent protein kinase 1 353 528 - -
Glsi03g1715 535 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Glsi03g1715 535 SUPERFAMILY Protein kinase-like (PK-like) 86 353 IPR011009 -
Glsi03g1715 535 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Glsi03g1715 535 CDD STKc_CAMK 87 344 - -
Glsi03g1715 535 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Glsi03g1715 535 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Glsi03g1715 535 Gene3D - 353 531 - -
Glsi03g1715 535 CDD EFh 467 525 IPR002048 GO:0005509
Glsi03g1715 535 ProSitePatterns Protein kinases ATP-binding region signature. 93 120 IPR017441 GO:0005524
Glsi03g1715 535 Gene3D Phosphorylase Kinase; domain 1 89 172 - -
Glsi03g1715 535 SMART efh_1 392 420 IPR002048 GO:0005509
Glsi03g1715 535 SMART efh_1 428 456 IPR002048 GO:0005509
Glsi03g1715 535 SMART efh_1 499 527 IPR002048 GO:0005509
Glsi03g1715 535 SMART efh_1 464 492 IPR002048 GO:0005509
Glsi03g1715 535 MobiDBLite consensus disorder prediction 1 70 - -
Glsi03g1715 535 FunFam calcium-dependent protein kinase 1 173 352 - -
Glsi03g1715 535 Gene3D Transferase(Phosphotransferase) domain 1 173 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1715 Glsi-ChrGlsi03 79176428 79180866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1715 1 535 EF-hand Containing Proteins AT4G04720 75.503 0.0 842
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Glsi03g1715 Pkinase 4.8e-73 CL0016