Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1712 ATGATGAGCGACTCAAATCAACCCAGCAATGCCAAAGAGACGAGAGCTGAGGAGGATACTAAGCCGGAATTCTCTGAAGATGAGGTGGCCCTTATTGCTAGGATGTTCAGCTTGGTTGGAGAGAGGTGGTCTCTGATTGCTGGGAGAATCCCAGGAAGGAGTGCAGAAGAGATTGAAAAGTACTGGACTTCAAAGTGCACTTCATCAAGCGAATCATAA 219 0.4703 MMSDSNQPSNAKETRAEEDTKPEFSEDEVALIARMFSLVGERWSLIAGRIPGRSAEEIEKYWTSKCTSSSES 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1712 72 SMART sant 20 68 IPR001005 -
Glsi03g1712 72 Pfam Myb-like DNA-binding domain 22 62 IPR001005 -
Glsi03g1712 72 SUPERFAMILY Homeodomain-like 21 64 IPR009057 -
Glsi03g1712 72 FunFam MYB-like transcription factor 23 65 - -
Glsi03g1712 72 CDD SANT 23 62 IPR001005 -
Glsi03g1712 72 Gene3D - 23 72 - -
Glsi03g1712 72 ProSiteProfiles Myb-like domain profile. 16 66 IPR001005 -
Glsi03g1712 72 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 23 66 - -
Glsi03g1712 72 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1712 Glsi-ChrGlsi03 79158754 79159148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1712 21 65 MYB Transcription Factor Family AT1G22640 48.889 4.95e-12 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi03g1712 Myb_DNA-binding 8.1e-08 CL0123