Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1657 ATGACCACCCTAAAACCACTACTCTTCTTGCTCTCATGCTTCCTACCCCACCTAGCTTCAAGCTTGAACTCCTACACTCCCCAACCCATTTCAAACTATACCCCCGAGACTCCCAAGAAAGTTGTCTTAAACAAGATAGACTCTTGCTGGCGAGTCAAATCAAACTGGGCATCAAATCGCCAAGCCCTGGCTAATTGTGCCATTGGCTATGGCAAAGATGCCATTGGAGGCAAGTATGGGGCAATATATAAGGTCACTGATCCCTCTGATGACCCTGTGAACCCAAAACCAGGTACACTTCGTTATGGTGTGATCCAAACACAACCACTTTGGATAATCTTCGCTAAGGATATGGTTATTACACTCAAGAACGAGCTCATCATGAATAGCTACAAGACCATTGATGGGAGAGGAGCAAAAGTGGAGATTTCTAATGGACCTTGCATTACAATTCAAGGTGTTAGCCATGTTATTGTACATGGGATTAGCATTCATGATTGTAAACCAGCAAAGGCTGCCTTGGTTAGGAGCACCCCTGACCACGTTGGGCATCGGCGAGGCTCTGATGGAGATGCCATTAGCATATTTGCTTCCTCGAATGTTTGGGTTGACCATTGCTTTTTCGCTCGTTGCACTGATGGTCTGGTTGATATTATACATGCCTCAACTGCTATCACCATTTCTAACAACTACTTCACACAACATGACAAAGTGATGCTTCTAGGACACAGCGATCAATACACAGCAGATAAGATAATGAAAGTAACGATAGCCTTCAATCATTTTGCTAGTGGCCTTTATGAAAGGATGCCAAGGGTAAGATTTGGTTACGCCCATGTAGTCAACAACAAATATGATGACTGGAAGATGTATGCAGTCGGTGGCAGTGCTAATCCAACCATTTTGAGTGAAGGGAACTACTATATAGCTCCCAGTAATGGCGGTGGAAAACAGGTTACCAAGAGGGAAGTGAAGAAAAACTGGCAGAATTGGAAATGGAGGTCTTCTAAGGATGTATTCATGAAGGGTGCTTATTTTGTTCAATCTGGGTATGGAAGTTGTGATCCCTACTATTCTCCTGCTCAATCTTTCATAGCCGCTCCAGCTTCCCTGGTCCCTGCATTGACTCTCAATTCAGGTCCTCTCAGCTGTGTTGTTGGGAAAGCATGTTAG 1173 0.4433 MTTLKPLLFLLSCFLPHLASSLNSYTPQPISNYTPETPKKVVLNKIDSCWRVKSNWASNRQALANCAIGYGKDAIGGKYGAIYKVTDPSDDPVNPKPGTLRYGVIQTQPLWIIFAKDMVITLKNELIMNSYKTIDGRGAKVEISNGPCITIQGVSHVIVHGISIHDCKPAKAALVRSTPDHVGHRRGSDGDAISIFASSNVWVDHCFFARCTDGLVDIIHASTAITISNNYFTQHDKVMLLGHSDQYTADKIMKVTIAFNHFASGLYERMPRVRFGYAHVVNNKYDDWKMYAVGGSANPTILSEGNYYIAPSNGGGKQVTKREVKKNWQNWKWRSSKDVFMKGAYFVQSGYGSCDPYYSPAQSFIAAPASLVPALTLNSGPLSCVVGKAC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1657 390 Gene3D - 43 383 IPR012334 -
Glsi03g1657 390 PANTHER PECTATE LYASE 18-RELATED 21 388 IPR045032 GO:0030570
Glsi03g1657 390 SMART amb_all 117 314 IPR002022 -
Glsi03g1657 390 Pfam Pectate lyase 125 308 IPR002022 -
Glsi03g1657 390 SUPERFAMILY Pectin lyase-like 44 380 IPR011050 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 66 83 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Glsi03g1657 390 PRINTS Pollen allergen Amb family signature 89 114 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1657 Glsi-ChrGlsi03 78843838 78845809 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1657 1 390 Polysaccharide Lyase AT4G22080 64.103 0.0 536