Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1656 ATGGCTTCCATAACCCCACTGCTCTTGCTTCCTTACTTTCTTCCATACTTTGCTTCGACCCTTTACGCAGATTCAACAGACAAATACCTCAGTGCTCCCCAACCCATTACAGACTATGTTATTCCCGAAAGTCCTAAGAATCTTGTCTTAAACAAGATAGACTCTTGCTGGCGAGAGAAATCAAACTGGGCATCAAATCGCCAAGCCCTGGCTGATTGTGCCATTGGCTATGGCAAGGATGCAATTGGAGGCAAGTATGGGACAATATATGAGGTCAATGATCCCTCTGATGATCCAGTGAACCCAAAACCTGGCACACTTCGTTATGGGGTAATCCAAACACGACCCCTTTGGATAATCTTCGCCAGGGACATGATTATTACACTCAAGAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGGAGAGGAGCCAACGTGGAGATTGCTAATGGGCCCTGCATTACGATACAAGGTGTTAGTCATGTTATTGTACATGGGATTAGCCTCCATGATTGTAAACCAGGAAAGGCTGCCATGGTTAGGAGCAGTCCTGATCATGTAGGGTATCGGGAAGGCTCTGATGGAGATGCCATTACCATATTTGCTTCCTCGAACATTTGGATTGATCATTGCTTCTTGGCTCGTTGTACTGATGGCCTTGTCGATGTTACTCACGCCTCAACTTCTGTCACCATCTCTAACAATTACTTCACCCAGCATGACAAGGTGATGCTGCTAGGACACAGCGATGAATACACTGCGGATAGAATAATGAAAGTGACTGTAGCCTTTAACCAATTTGCCAATGGCTTAATAGAAAGAATGCCAAGGGTAAGATTTGGTTATGCACATGTTGTGAACAACCAATATGATGAGTGGCTTATGTATGCCATTGGTGGCAGTGCAGACCCTACCATTTTTAGTGAAGGGAACTACTTTATGGCTTCAAAAACTAAAAGTGCAAAGCAGGTTACAAAGAGGGAAACAAGTAAAAACTGGAGTAACTGGAAATGGAGGAGTTTTGGGGATGAATTCTTAAATGGAGCTTATTTTGTTTCATCTGGGTATGGAAGTTGCGCCCCATATTATCAACCTGCTCAATCCTTTATAGCTGCCCCTGCCTCCTTGGTGCCTCTATTAACTCTCAATGCAGGTCCACTGAATTGCGTTGTTGGCAAAGCATGTTAA 1194 0.4389 MASITPLLLLPYFLPYFASTLYADSTDKYLSAPQPITDYVIPESPKNLVLNKIDSCWREKSNWASNRQALADCAIGYGKDAIGGKYGTIYEVNDPSDDPVNPKPGTLRYGVIQTRPLWIIFARDMIITLKNELIMNSYKTIDGRGANVEIANGPCITIQGVSHVIVHGISLHDCKPGKAAMVRSSPDHVGYREGSDGDAITIFASSNIWIDHCFLARCTDGLVDVTHASTSVTISNNYFTQHDKVMLLGHSDEYTADRIMKVTVAFNQFANGLIERMPRVRFGYAHVVNNQYDEWLMYAIGGSADPTIFSEGNYFMASKTKSAKQVTKRETSKNWSNWKWRSFGDEFLNGAYFVSSGYGSCAPYYQPAQSFIAAPASLVPLLTLNAGPLNCVVGKAC 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 338 362 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 276 295 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 132 148 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 368 391 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 196 217 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 96 121 IPR018082 -
Glsi03g1656 397 PRINTS Pollen allergen Amb family signature 73 90 IPR018082 -
Glsi03g1656 397 Pfam Pectate lyase 132 315 IPR002022 -
Glsi03g1656 397 Gene3D - 50 390 IPR012334 -
Glsi03g1656 397 SUPERFAMILY Pectin lyase-like 51 388 IPR011050 -
Glsi03g1656 397 PANTHER PECTATE LYASE 18-RELATED 31 395 IPR045032 GO:0030570
Glsi03g1656 397 SMART amb_all 124 321 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1656 Glsi-ChrGlsi03 78839256 78841251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1656 39 397 Polysaccharide Lyase AT1G11920 70.278 0.0 537