Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1644 ATGGAGATTTTTTTGGCCCAGAGAGAAGGGTCAGATCAGCTTACTGACAATAAGCTGGAAAAAATTTCAAAATGCTCAAGTGCTATTGCAGTTTCAAAGAAGAGAAAGGTTCGAGAGAGTCATAAATATCTAAATGGAAAACCAAAGTCAGAAGGGGAAGGAGGCCTTTCGTGGTGTTCAAAGAGTACTGCAAAACTTCAATGCAAGAGAAGAGATGATGAACCAAAGAAGTTTCTTGCTGCCTCAAAAAAGAGAAGTTTGCAGAATGATTTATTGATTGACAAGTTGGAAGAAGATGACGAATTGTTGATTCTCGCAAAGATTAAGTCCAGAAACAGATCTAAGAAAATGGATAATATGATGCATAAAGGATGTTCTGAATCCAGTGCAGAAGGTCTATACTCAAGCAATACCAGTTCGGATTCTCCATCACATACCAGATCACCAATTTCTGATTCAGAAAAACATGCTAAGGGCAATGACACTCCAAGAAGTAAGAAGGGTACTAAACAAGATTGCTTGACATGTCATCAATGCATGAAAAAGGAGAGAAGAATTTTTGTCCCTTGTACTAACTGTGAACAGAAACTGTACTGTATTCAGTGCATCAGGCAATGGTATCCCGATATGTCAGAAGAAGAAATTGCAGAGAGTTGCCCCTTTTGCTGTAAAAACTGCAATTGCAATGTTTGTTTGCGTTCAAGTGGGACTATTAAGACATCTAACAGGGACATCACTGATTACGAAAAGGTTCAGTATCTGCAATATTTGATTAACTTACTCCAACCTTTTCTGAAACAAATTAGTGAAGAACAAACTCTAGAGGAAGAGATTGAAGCTAGAATACAAGGAAAACCGTGTTCGGAGATTAAGATACAACAAACTCTTTGTAGTGATGATGAACGTGTCTACTGCGACCACTGTGCAACTTCAATTGTTGACCTTCATAGGAGCTGCCCTGAGTGCTCTTACGAACTCTGCCTTAAATGTTGCCAAGAAATCCGCAACGGAAGTATTTCACCCCGTGCTGAAGTAAAGTTTCAGTATGTGAATAAGGGTTATGATTATATGCATGGTGGTGATCCTCAGCCTGGGTCTTGTCATTTGGAGACTTTAGATGATCATATTGAGCTATCTGCTGAGTGGAGTGCCAAAAGCAATGGAAGTGTTTGTTGTGCCCCAAAAGTGGTAGGGGGTTGTGGAAACTGTGTGTTGGAGCTCAAGCACATTCTTCCACGGGGTTGGATATCTGACTTGGAAGCTAAAGCTTGTGATTTATTGAGAATTTGCAAAATTGAACAAACTCATAAGCAGAAAGATGCAGCTGCATCAAGATGTAACTCTATGAGAAGAGCAGCTTCTAGAGAACGAAATGATGACAATGACATATACTGCCCTTCTTCAAGGGACGCATTAAATGAAGGGTTATTGCTCTTCCAAAAGCATTGGACTAATGGTGAACCAGTTATAGTTCGTGATGTTCTTCAACAAGCAACAGGTTTGAGTTGGGAGCCAATGGTTATCTGGCGTGCAGTATGTGAAGATTTGGATTCAAAAATGTCAGAAGTGAAGGCCATTGATTGCCTTGCTGGTTGTGAGGTAGAAATCAACACTCGTAAATTCTTTAAAGGTTATATGGAGGGAAGAACATATAGAAATCTCTGGCCAGAGATGCTCAAGTTAAAAGACTGGCCCCCCTCTGACAAGTTTGAAAATCTTTTGCCCCGCCACTGTGATGAGTTTATACGATCCTTGCCATTTCAAGAATACACTGATCCGCGGGCTGGAATTCTCAATCTTGCTGTCAAGTTGCCAATGCATGTCCTGAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGGATCAGAGAAGAACTTGGCAGAGGAGATTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTAGCCCATACATCAGAAGTAAAGTTAACTGATGAGCAACATTCCATTATTTTAACGTTGAAAAAAGCACACAAGGCCCAAGATGAGAAAGAGCTTCTTGCTCTATGGCCTTGTAACAGAGAACAGAAAGAAGATGAGGAAGTCACAGAATCTGCAGATACAGAGAAGTTCTGTGCTGAAATCAACGAAAAGACCTCTCCAAACAATGTGCCTGAAGAGGTCACTTTTCCTGACATCACTATAGAAAATGAGACAAGAGAAGCAGGTGCTGCTCTCTGGGACATCTTCCGAAGAGAAGATACTGAAAAATTAGAGATGTATTTAAGGAAACATTCAAAAGAATTTAGACATACTTATTGTTCTCCAGTTGAGCAGGTTGTCCACCCAATTCATGACCAATGCTTTTATTTAACTATGGAGCACAAGAAGAAGTTGAAGGAGGAGTTCGGTGTTGAACCATGGACTTTTGAGCAGCGACTTGGGGAGGCAGTGTTTATTCCTGCAGGATGCCCTCACCAAGTTAGAAATCTTGTGTTCCGACAGCTTCCTAAGGACCATAGGGTCAGAGAAGACAAGCTTGAGATAAAGAAGATGATAGTCTATGCTGCTAACCAAGCTCTAAAAGATTTAGAAGTCTTACTCAAGTGTTCTTCTTGA 2595 0.4042 MEIFLAQREGSDQLTDNKLEKISKCSSAIAVSKKRKVRESHKYLNGKPKSEGEGGLSWCSKSTAKLQCKRRDDEPKKFLAASKKRSLQNDLLIDKLEEDDELLILAKIKSRNRSKKMDNMMHKGCSESSAEGLYSSNTSSDSPSHTRSPISDSEKHAKGNDTPRSKKGTKQDCLTCHQCMKKERRIFVPCTNCEQKLYCIQCIRQWYPDMSEEEIAESCPFCCKNCNCNVCLRSSGTIKTSNRDITDYEKVQYLQYLINLLQPFLKQISEEQTLEEEIEARIQGKPCSEIKIQQTLCSDDERVYCDHCATSIVDLHRSCPECSYELCLKCCQEIRNGSISPRAEVKFQYVNKGYDYMHGGDPQPGSCHLETLDDHIELSAEWSAKSNGSVCCAPKVVGGCGNCVLELKHILPRGWISDLEAKACDLLRICKIEQTHKQKDAAASRCNSMRRAASRERNDDNDIYCPSSRDALNEGLLLFQKHWTNGEPVIVRDVLQQATGLSWEPMVIWRAVCEDLDSKMSEVKAIDCLAGCEVEINTRKFFKGYMEGRTYRNLWPEMLKLKDWPPSDKFENLLPRHCDEFIRSLPFQEYTDPRAGILNLAVKLPMHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNILAHTSEVKLTDEQHSIILTLKKAHKAQDEKELLALWPCNREQKEDEEVTESADTEKFCAEINEKTSPNNVPEEVTFPDITIENETREAGAALWDIFRREDTEKLEMYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTMEHKKKLKEEFGVEPWTFEQRLGEAVFIPAGCPHQVRNLVFRQLPKDHRVREDKLEIKKMIVYAANQALKDLEVLLKCSS 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1644 864 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 170 241 IPR018866 -
Glsi03g1644 864 MobiDBLite consensus disorder prediction 37 56 - -
Glsi03g1644 864 ProSiteProfiles Zinc finger RING-type profile. 173 222 IPR001841 -
Glsi03g1644 864 MobiDBLite consensus disorder prediction 129 147 - -
Glsi03g1644 864 SUPERFAMILY Clavaminate synthase-like 478 839 - -
Glsi03g1644 864 ProSiteProfiles JmjC domain profile. 593 862 IPR003347 -
Glsi03g1644 864 Pfam JmjC domain, hydroxylase 733 825 IPR003347 -
Glsi03g1644 864 CDD cupin_RmlC-like 774 822 - -
Glsi03g1644 864 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 45 859 IPR045109 GO:0032454|GO:0033169
Glsi03g1644 864 MobiDBLite consensus disorder prediction 115 170 - -
Glsi03g1644 864 Gene3D Cupin 464 845 - -
Glsi03g1644 864 MobiDBLite consensus disorder prediction 148 170 - -
Glsi03g1644 864 SMART cupin_9 574 838 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1644 Glsi-ChrGlsi03 78782649 78787555 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Glsi03g1644 JmjC 2e-11 CL0029