Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1642 ATGACCACACAACCAAACACAAAACCACCCCTTCTGTTCTTTCTGGTGATTTTTCTTTTCTTTCACCAGTTATGGATATTCAGAGTCCAAGCCAAATGCAGGTCTGGCTGCAAACTTGCTTTAGCTTTATATCACGTCGGAGAAGGCTCAAATCTCAGTTACGTCAGCAACCTCTTCGGCCTGCGAATTCCAGAGATTCTGAAATACAATCCCAGTGTCAAAAACCCCGATATTCCCTCGAGCCAAAACCGAATACACGTACCCTTCTCGTGCGAATGCTTGAACAGCGATTTCTTAGGGCACACTTTCTCTTACAAGACGCAACACGGTGATACCTACGCTAAGATTGCTCGGGGGCCTTTCTCCAACCTCACCAGCGAAGATTGGTTGCGCAGAGTGAACCTTCTGGAACCTACCCGGATACCCGAGAACGTCAGAATCAATGTCACCGTCAATTGCTCCTGCGGAAATAGACACGTGTCGAAGGATTATGGGCTGTTCATGACGTACCCACTTCGGACCGGTGAGGGCTTGTCGGAGGTTGCGGTGGAGTTCGGCGTGCCCGTGGAGCTGCTGCAGAGGTACAACCCTGGGTCTAATTTCACCGTTGGCCTGGCGTTCGTGCCGGCTAAAGGAATATCTGGTGGAGCCATTGCTGGAATAGCTGTTGGAAGCGCTGCTGGGGCCTCGCTAGTGGCACTTCTATGTTTCGGACTATATAGAAGAAAGAGAGTGGCAGAAGAATCCTTTCTCCCAGGAGCATCTGAAGATAAGTATAACCAACCTGGACACGGTTGTGGTAGCAACTTAGAGAAGGCATCAGAATCGGTTGATGGTGCTTCTCGCAGGTTGACTGGTATTACAGTGGACAAGTCAGTGGAGTTCTCATACGAGGAGCTTGCCAAAGCTACCGATGGCTTTAGTCTGGCTAACAAGATCGGACAAGGTGGCTTTGGATCTGTTTACTATGCAGAGCTTCGAGATGAGAAAGCTGCAATTAAGAAGATGGATATGCAAGCATCAAAAGAATTCCTTGCTGAACTCAAGGTTCTGACACACGTCCATCACTTAAACTTGGTACGCTTAATAGGATATTGTGTCGAGAAGTCCTTATTTTTGGTTTATGAGTACATTGAGAATGGCAATTTAAGCCAACATTTACGTGGCTCAGGTAGGGAACCATTACCGTGGTCAGCTAGAGTACAAATTGCCCTGGATGCAGCAAGAGGACTAGAATACATCCACGAGCAGACAGTTCCTGTCTACATCCATCGAGATATTAAGCCCCCAAACATTTTAATAGACAAAAACTTCCGTGGAAAGGTTGCGGATTTTGGTCAGACAAAACTGACTGAATATGGAAGTTCTTCATTGCAAACACATCTTGTGGGTACTTTTGGCTATATGCCTCCAGAATATGCACAATATGGTGACGTTTCCCCGAAAATGGATGTATATGCTTTTGGAGTTGTCCTCTATGAACTCGTATCCGCCAAGGGAGCTATTGTGAAGACAAGCGAGCTTGTGAATGAATCAAAGGGTCTAATTGCCTTGTTTGAAGACGTTCTTAGTCAGCAAGACCCAGAAGAAGCTCTTCGTAAACTTGTTGACCCCAGGCTCGGTGACAACTACCCTATTGACTCGGTATATAAGATGTCTCAGCTTGCCAAGGTTTGCACGCATGAAAATCCTCAGCTGAGGCCAAGCATGAGATCAATTGTAGTTGCATTGATGACACTTTCATCTCCAACCGACGACTGGGATGTCGGGTCCTTCTATGAGAACCGAGCTTCAATTCAAATCGTGTCAGGAAGGTAA 1818 0.4664 MTTQPNTKPPLLFFLVIFLFFHQLWIFRVQAKCRSGCKLALALYHVGEGSNLSYVSNLFGLRIPEILKYNPSVKNPDIPSSQNRIHVPFSCECLNSDFLGHTFSYKTQHGDTYAKIARGPFSNLTSEDWLRRVNLLEPTRIPENVRINVTVNCSCGNRHVSKDYGLFMTYPLRTGEGLSEVAVEFGVPVELLQRYNPGSNFTVGLAFVPAKGISGGAIAGIAVGSAAGASLVALLCFGLYRRKRVAEESFLPGASEDKYNQPGHGCGSNLEKASESVDGASRRLTGITVDKSVEFSYEELAKATDGFSLANKIGQGGFGSVYYAELRDEKAAIKKMDMQASKEFLAELKVLTHVHHLNLVRLIGYCVEKSLFLVYEYIENGNLSQHLRGSGREPLPWSARVQIALDAARGLEYIHEQTVPVYIHRDIKPPNILIDKNFRGKVADFGQTKLTEYGSSSLQTHLVGTFGYMPPEYAQYGDVSPKMDVYAFGVVLYELVSAKGAIVKTSELVNESKGLIALFEDVLSQQDPEEALRKLVDPRLGDNYPIDSVYKMSQLAKVCTHENPQLRPSMRSIVVALMTLSSPTDDWDVGSFYENRASIQIVSGR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1642 605 Pfam LysM domain 44 79 IPR018392 -
Glsi03g1642 605 Gene3D Transferase(Phosphotransferase) domain 1 378 586 - -
Glsi03g1642 605 ProSiteProfiles Protein kinase domain profile. 307 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1642 605 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Glsi03g1642 605 FunFam LysM receptor kinase 2 286 377 - -
Glsi03g1642 605 Pfam Protein kinase domain 309 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1642 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Glsi03g1642 605 SUPERFAMILY Protein kinase-like (PK-like) 287 577 IPR011009 -
Glsi03g1642 605 FunFam PTI1-like tyrosine-protein kinase 3 378 591 - -
Glsi03g1642 605 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 16 591 IPR044812 GO:0019199|GO:0045087
Glsi03g1642 605 SMART serkin_6 307 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1642 605 Gene3D Phosphorylase Kinase; domain 1 292 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1642 Glsi-ChrGlsi03 78759523 78766745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1642 15 605 Receptor kinase-like Gene Family AT3G21630 54.870 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Glsi03g1642 PK_Tyr_Ser-Thr 1e-44 CL0016