Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1641 ATGTGCTCCATCTCACTTGATACCCCGCCTCTAAGCTCCGCAGTAGTGGCTGCAACAACAATGGCTGACACCCGGTTGGCCTTTTCTCTCCTTCTCACTGAGATTATGTCAATCGCTATGATCTTTGCTGCGCTGCCTCTTGCTCTGGCCATCACTGACCCTTCTGACGTTCAAACACTTGAGATTATGTACAACGCATTGAATAGTCCCTCTCAGCTAACAGGTTGGAAAATCGGTCATGGCGATCCATGCGGAGAGTCATGGGAAGGGATTGCTTGTGAGGGTTCGGCCATTGTTTCCATTGAGCTCTCAGGTTTAGGGCTCAATGGGACTCTGGGATACCTGCTTTCAAACCTCACGTCACTGAGAGAGCTTGACTTAAGTGACAACAAGATTGAAGACACAATTCCCTACCAGTTACCACCAAATCTTACAAGCCTGAATCTTGCAAGAAATAACTTAAGTGGAAGTCTTCCTTATTCCATTTCTGCCATGGTTTCCCTCAATTATCTGAATGTAAGCCATAATGCACTGTCCTTATCAATTGGAGACGTTTTTGCTAGTCTTGCTCATCTTGGTACCCTGGATCTATCATTCAATAACTTTTCTGGCGATCTTTCTAGTACATTTGATTCATTGTCCAATCTTTCTTCTCTCTTCTTGCAGAACAATCAGTTGACTGGCTCTCTCAATGCTCTTGTTGGTTTGCCTTTAAGTAGATTAAATGTTGCATACAACCGTTTTAGTGGATGGATACCTCATGAGCTCAGTTCCATCCATAATTTCATATTTGATGGAAATTCTTTTATCAATAGTCCTGATCCTCCTTCACCACCACGTACACCTCCTACGCCATCTTCTAACAATCACCACTATTCTGGATCTGGTTCAAATAAAACACAAGGATATGATAGTGAAAATTCTGATGGCCATGAGGGTTTGACGACTGGGGCTACTGTAGGAATCATATTGGCCTCTGTCTTTCTGGTATTTATTATGCTACTTGTTCTTGCTTTCTGTATCCAAAAGCAAAAACGGAAGGAAAAAGGTGCAAGATCTTCTGGGGGGAGTCTTCCTCTTGGAACTCATAATGTAACTCCTCAGATGAAAGAACACGGGGTAAAAAGTGCTGCTGTTATTACAGATCTCAAGCGACCTCCTGCTGAAACAGTTATGGTTGAGAGCGTACCTGCAAAACTTGGATCTTTAAAGCAGATGAAGTCCCCTATAACTGCTACATCATACACAGTTGCTTCTCTCCAAAGTGTAACAAATAGCTTTAATCAAGAGTTTCTTATTGGTGAAGGTTCTCTTGGGCGAGTTTATAAGGCTTATTTTCCTAATGGGAAGGTCATGGCGATTAAGAAAATCGACAATGCAGCATTGTCATTACAGGAGGAAGACAACTTTCTTGAAGCTGTTTCAAATATGTCACGCTTGCGGCATCCAAGCATTGTTACCCTGGCTGGATATTGTGCAGAGCATAGGCAACGTCTTCTAGTTTATGAGTATATTGGAAATGGAAATTTACATGATATGCTCCATTTTGTCGACGATAGCAGTAAGGCTTTATCCTGGAATGCCCGTGTCCGAATAGCGCTTGACACAGCTCGAGCTTTAGAGTACCTGCATGAAGTATGCTTGCCTTCTGTTGTACATAGAAACTTCAAATCAGCTAATATACTACTTGATGAAGAGCTCAATCCTCACCTTTCTGACTGTGGTTTAGCTGCTCTAACCCCAAACACTGAGCGGCAGGTTTCAACTCAGATGGTTTGTTCATTTGGTTATAGTTCTCCTGAGTTTGCATTATCAGGAATATATACTGTAAAGAGTGATGTTTACAGCTTTGGGGTGGTAATGTTGGAGCTATTGACTGGTCGGAAGCCACTTGACAGTTCACGAGTCCGGTCAGAGCAGTCTCTTGTGAGGTGGGCTACTCCTCAGCTCCATGATATCGATGCCTTGTCCAAAATGGTTGATCCTGCTATGAATGGCATGTATCCTGCAAAGTCACTGTCACGCTTTGCTGATATCATTGCTCTCTGTGTTCTGCCGGAACCTGAATTCCGACCTCCTATGTCTGAGGTAGTGCAAGCATTGGTACGCTTAGTGCAAAGAGCAACTGTGATTAAACGTCGTTCCAGTGATGAATCTGGTTTTGGTCACAAGACCCCAGATCAGGAGGCGATCCACTTGTCATTTTAA 2208 0.4325 MCSISLDTPPLSSAVVAATTMADTRLAFSLLLTEIMSIAMIFAALPLALAITDPSDVQTLEIMYNALNSPSQLTGWKIGHGDPCGESWEGIACEGSAIVSIELSGLGLNGTLGYLLSNLTSLRELDLSDNKIEDTIPYQLPPNLTSLNLARNNLSGSLPYSISAMVSLNYLNVSHNALSLSIGDVFASLAHLGTLDLSFNNFSGDLSSTFDSLSNLSSLFLQNNQLTGSLNALVGLPLSRLNVAYNRFSGWIPHELSSIHNFIFDGNSFINSPDPPSPPRTPPTPSSNNHHYSGSGSNKTQGYDSENSDGHEGLTTGATVGIILASVFLVFIMLLVLAFCIQKQKRKEKGARSSGGSLPLGTHNVTPQMKEHGVKSAAVITDLKRPPAETVMVESVPAKLGSLKQMKSPITATSYTVASLQSVTNSFNQEFLIGEGSLGRVYKAYFPNGKVMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHPSIVTLAGYCAEHRQRLLVYEYIGNGNLHDMLHFVDDSSKALSWNARVRIALDTARALEYLHEVCLPSVVHRNFKSANILLDEELNPHLSDCGLAALTPNTERQVSTQMVCSFGYSSPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALSKMVDPAMNGMYPAKSLSRFADIIALCVLPEPEFRPPMSEVVQALVRLVQRATVIKRRSSDESGFGHKTPDQEAIHLSF 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1641 735 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 393 504 - -
Glsi03g1641 735 Pfam Leucine rich repeat N-terminal domain 54 93 IPR013210 -
Glsi03g1641 735 Gene3D Phosphorylase Kinase; domain 1 390 504 - -
Glsi03g1641 735 MobiDBLite consensus disorder prediction 286 310 - -
Glsi03g1641 735 Gene3D Ribonuclease Inhibitor 52 287 IPR032675 -
Glsi03g1641 735 Gene3D Transferase(Phosphotransferase) domain 1 505 725 - -
Glsi03g1641 735 MobiDBLite consensus disorder prediction 271 310 - -
Glsi03g1641 735 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 505 715 - -
Glsi03g1641 735 SMART LRR_typ_2 189 212 IPR003591 -
Glsi03g1641 735 SMART LRR_typ_2 213 236 IPR003591 -
Glsi03g1641 735 SMART LRR_typ_2 165 188 IPR003591 -
Glsi03g1641 735 SMART LRR_typ_2 119 147 IPR003591 -
Glsi03g1641 735 ProSiteProfiles Protein kinase domain profile. 427 704 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1641 735 CDD STKc_IRAK 433 704 - -
Glsi03g1641 735 SUPERFAMILY Protein kinase-like (PK-like) 405 701 IPR011009 -
Glsi03g1641 735 ProSiteProfiles Leucine-rich repeat profile. 121 142 IPR001611 GO:0005515
Glsi03g1641 735 Pfam Protein kinase domain 429 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1641 735 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 44 705 IPR046959 -
Glsi03g1641 735 SUPERFAMILY L domain-like 53 263 - -
Glsi03g1641 735 MobiDBLite consensus disorder prediction 715 735 - -
Glsi03g1641 735 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 53 280 - -
Glsi03g1641 735 Pfam Leucine rich repeat 142 202 IPR001611 GO:0005515
Glsi03g1641 735 Pfam Leucine Rich repeat 119 135 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1641 Glsi-ChrGlsi03 78743122 78748759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1641 165 735 Strubbelig Receptor Gene Family AT4G22130 68.870 0.0 780
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Glsi03g1641 Pkinase 1.3e-42 CL0016