Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1637 ATGGAGGATGGTTCTAATGGGACTTCTTGTATGATGGCTTTTGGAGAGAATAGTGGTGGGCTATGTCCCATGATGATGGTGCCTTTAGTGACTTCTCATCAAAGTGGTCATCATCCATTAAATCCTAATCTTAATAATATTCCTGTTAACTCAGACACAAACAGTCTTTTCCTTCCTTCACCTTGCACTAACGATCGCCACCCAAACCGCAATAATACTAGACCGTCCTCTCTCCTTCTTCACAGTAATACCGCCAACACTAACACTGGGTTCGGCTGTTATTTCATGGAGAGTAACCCCAACAACAACGATGGTAGCTCTTCTTCTTCAACTTCTTCTGTTAAAGCAAAGATCATGGCTCATCCTCACTACCACCGTCTTCTGGCTGCTTACGTCAATTGTCAAAAGATTGGAGCGCCGCCTGAAGTGGTGGCGAGGTTAGATGAAGCATGCGCTTCTGCGGCGGCAATGGCTGGTGACACGGCTGGGTCATCTTGCATCGGCGAAGATCCGGCGCTGGATCAGTTCATGGAGGCTTACTGTGAGATGCTGACGAAGTATGAGCAAGAGCTTTCAAAACCCTTCAAGGAAGCTATGTTCTTCCTTCAAAATTTTGAGCGTCAGTTTAAAGCTCTTGCTATTTCGCCTATGGCTATGGACTTTGCTTGCAATGAGAATACTGATAGGAATGAATCATCTGAAGATGATATTGATCTACACAACAAAACCATAGATCCCCTGGCAGAGGACCAGGAACTGAAGGGCCAGCTTCTGCGTAAGTACAGTGGATACTTAGGCAATCTCAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGCAAGCTGCCTAAAGAAGCTAGGCAACAGTTACTTGATTGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGATGGCTCTTGCAGAATCAACAGGTCTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGTCACTGGAAGCCTTCAGAGGACATGCAGTTTGTGATGGTGGATCCAACCCACCCACACTATTACATGAACAATGTTATGGGCAATCCCTACCCAATGCTCTGA 1095 0.4511 MEDGSNGTSCMMAFGENSGGLCPMMMVPLVTSHQSGHHPLNPNLNNIPVNSDTNSLFLPSPCTNDRHPNRNNTRPSSLLLHSNTANTNTGFGCYFMESNPNNNDGSSSSSTSSVKAKIMAHPHYHRLLAAYVNCQKIGAPPEVVARLDEACASAAAMAGDTAGSSCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMFFLQNFERQFKALAISPMAMDFACNENTDRNESSEDDIDLHNKTIDPLAEDQELKGQLLRKYSGYLGNLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKMALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVMVDPTHPHYYMNNVMGNPYPML 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1637 364 ProSitePatterns 'Homeobox' domain signature. 310 333 IPR017970 GO:0000981|GO:0006355
Glsi03g1637 364 SMART ELK_2 252 273 IPR005539 GO:0003677
Glsi03g1637 364 Pfam Homeobox KN domain 292 331 IPR008422 GO:0003677|GO:0006355
Glsi03g1637 364 SMART KNOX1_2 112 156 IPR005540 GO:0003677|GO:0005634
Glsi03g1637 364 FunFam Homeobox protein knotted-1-like 2 277 339 - -
Glsi03g1637 364 Pfam KNOX2 domain 166 212 IPR005541 GO:0003677|GO:0005634
Glsi03g1637 364 ProSiteProfiles ELK domain profile. 252 272 IPR005539 GO:0003677
Glsi03g1637 364 Gene3D - 277 339 - -
Glsi03g1637 364 Pfam ELK domain 252 273 IPR005539 GO:0003677
Glsi03g1637 364 Pfam KNOX1 domain 114 152 IPR005540 GO:0003677|GO:0005634
Glsi03g1637 364 CDD homeodomain 284 336 IPR001356 GO:0003677
Glsi03g1637 364 SMART HOX_1 274 339 IPR001356 GO:0003677
Glsi03g1637 364 SUPERFAMILY Homeodomain-like 274 349 IPR009057 -
Glsi03g1637 364 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 341 - -
Glsi03g1637 364 ProSiteProfiles 'Homeobox' domain profile. 272 335 IPR001356 GO:0003677
Glsi03g1637 364 SMART KNOX2_2 163 214 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1637 Glsi-ChrGlsi03 78717380 78721719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1637 114 363 Homeobox Transcription Factor Family AT1G62360 77.559 7.07e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi03g1637 KNOX2 9.1e-20 No_clan