Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1620 ATGAGTCAACTCGGTGTGATATTGCAGGAATCGCTGCAAAGAGAGAGGGAGACAAGAACGATTCTGGGGTTATTGACGGAGCAAATGGAAGCTGTGGATAGAGAGCCTCGGAGGAGGCGGACTCTGAAAGAACGCCTTCGATTCGCCGGAATGGGATGTTGTGGAGCTACCTGGGGTTTCCGTCCAACCACCGTAAGCGTAAGGCACGAAGAAGAAGAAGAAGAACGGCAGCAGCAGCAGCAACGACTCCACGAAACAAATCCGGGTCAAGGCTCGAGCTCATCGGACCCCGATTGTCTAACCCCAACTCCGGCAGGTGCTGGTATGAATCTGGCGGCGGCGTTGGCTGCGGAGCGTCTGTTCCGGGGATCGCAAGAACCGGATTCAGGTAGCCAAGGATCATCGGCCGCGAACAGTTCGGGCGGAAGACGTGGAGGCGGGACGGTGCCGGGAACGCCGTGGAGGGTGTCGCTGATGAGACTGTTGGAGGAAACGGAGGGTGGGGACGGGGAGATGACGATGGAAACAGAGAAAGCAGGAGGAGGGAGTTTGGGGAATGATACAGTGTGCTGCGTGTGCATGGGAAGGAAGAAGGGAGCAGCGTTCATACCGTGTGGGCACACTTTTTGCAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGAGGAACTTGTCCCCTTTGCAATCGTTCGATCCTCGAGATTCTGGACATTTTCTAA 717 0.5621 MSQLGVILQESLQRERETRTILGLLTEQMEAVDREPRRRRTLKERLRFAGMGCCGATWGFRPTTVSVRHEEEEEERQQQQQRLHETNPGQGSSSSDPDCLTPTPAGAGMNLAAALAAERLFRGSQEPDSGSQGSSAANSSGGRRGGGTVPGTPWRVSLMRLLEETEGGDGEMTMETEKAGGGSLGNDTVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1620 238 SMART ring_2 190 227 IPR001841 -
Glsi03g1620 238 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
Glsi03g1620 238 MobiDBLite consensus disorder prediction 66 106 - -
Glsi03g1620 238 MobiDBLite consensus disorder prediction 125 142 - -
Glsi03g1620 238 Pfam Zinc finger, C3HC4 type (RING finger) 187 232 - -
Glsi03g1620 238 MobiDBLite consensus disorder prediction 82 100 - -
Glsi03g1620 238 CDD RING-HC 190 227 - -
Glsi03g1620 238 PANTHER OS01G0917900 PROTEIN 5 238 - -
Glsi03g1620 238 SUPERFAMILY RING/U-box 185 235 - -
Glsi03g1620 238 MobiDBLite consensus disorder prediction 66 81 - -
Glsi03g1620 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 237 IPR013083 -
Glsi03g1620 238 MobiDBLite consensus disorder prediction 123 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1620 Glsi-ChrGlsi03 78494972 78495688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1620 21 238 C3H Transcription Factor Family AT4G22250 50.220 2.38e-59 185