Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1615 ATGGGGAAATCCGGGGGTAGAAAAAAGAAGGGTGGTTCAAACCAAGTTTCGGTTGACAATTCAACTCCAAGTGCTAATGGTGGTGTGGAATTGGACTCTTCAATCTTTTTGAAAAGAGCCCATGAGCTCAAGGAAGAAGGCAATAGGAGGTTTCAGAATAAGGACTATGCTGGTGCTCTTGAGCAGTATGAGAATGCTCTTCGACTAACCCCCAAGATCCACCCTGACAGAGCTGTCTTTCACAGCAATAGAGCGGCATGTTTGATGCAAATGAGGCCCATAGATTATGAAACTGTGATTGCTGAGTGCACCATGGCGCTGCAGGTCCAGCCTCAATTTGTCCGGGCACTTCTTCGGAGGGCTCGGGCATTTGAGGCTATAGGGAAATATGAAATGGCCATGCAAGATGTACAAGTCTTATTGGGAGCTGACCCTTATCATCGGGATGCTTTGGAGATTGCCCAGAGATTGAGGACAGCATTGGGACCTCGCCTGGAAGCCCAGCAGGATCTCCAAAGTCGGCCCTCCCCTGCTGCCCTTGGTGCTTCTGCAGTCCGTGGAGCCCCTATTTCTGGTCTAGGGCCATGTTTACCAGCCAGGCCAGTACCGAAGAAGGCGGCGAACTCAGTAGTTGGATCCGTTGCTTCACTTAATAGTAAGCTGGAGAAGTCCCAATCAAGTTTACTTACTGAAAATGGTCCTGATACCAAGTCCCAATTGCCAAAACTTGCATTGAAGCCTTCAAATGGTTCCGCAAGATCACCTAACACAAGAAAAGAGAACCAGAAGGAGCTGTCATCTCATTCATCAACCGCACATGGACAGGGTTCAGAGGTTGTAATTCGGTGGAGGCCATTGAAACTTGTTTATGATCATGACATTAGGCTTTCCCAGATGCCAATGAATTGCAGTTTTAGAATACTAAGACATATAGTGAGCAAAAGATTTCCATCGTCAAAGTCTGTTCTGATCAAGTATAAGGATAATGATGGTGATTTGGTGACTATAACCTCTACTGATGAACTCAGATTGGCAGAGTCTAGTGTCGACAGCCATCTTCTAAAAGAACCTGAAGCAGATAAAAGTGATTCATTCGGAATATTGAGACTGCATATTGTTGAAGTTGGTCCTGAGCAGGAGCCTCCTTTACTGGAAGAAGAGGAAGTAAAACCTGTTGAGAGTGAAGGGATCAAGGGAGATGAGAGTGCATCGCATACTTCCCTCAGTGAAACTGTCTCAGAAGCTGCTGATACTGAGGTTGATAAGACAGTGAAAGAAGCTCCAAAGGAAAAACCGGCAGCCACAGAAGATGCTGAATGCAAGGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGATCGCATGTTGGTATTGATCCCGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCAGAGGCACTTGAGGAAACAGTAACTGGTGAGGAGGCTCAAGATCTCTTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTAGCGGCATTGGCATTCTTCAACTGGGGAAACATTCACATGTGTGCAGCAAGGAAACGAATTCCCTTAGATGAGTCCGCTGGGAAGGAGGCCGTGGCAGAACAGCTTCAAGTGGCCTATGACTGGGTCAAGGAGAAATATTCTTTGGCAAGAGAGAAGTATGAAGAAGCACTCTTGATAAAACCAGACTTTTATGAGGGATTATTGGCTCTGGGACAGCAACAATTTGAAATGGCCAAACTTCACTGGTCATTTGCACTTGCTAAGAAGATGGATCTATCAGGCTGGGATTCTACAGAGACACTTAAACTTTTTGATGGTGCAGAGGAGAAGATGAAAGCTGCAACTGATATGTGGGAAAAGCTGGAGGAACAGAGAGCAAATGAGCTAAAGGACCCAAATGCAAGCAAGAAAGAGGAACTACTGAGAAGAAGAAAAAAACAGGGAGGTGCTGCTGAAGGTGAGACCTCCACTGTTGGTGGTCAGGGTGATATATCCGCGGAGGAAGCTGCAGAGCAAGCAGCTGTCATGAGATCACAGATTCACCTCTTTTGGGGTAATATGCTATTTGAAAGATCCCAAGTTGAATGCAAATTAGGGCTGGGTGGTTGGAAGAAAAATATGGATGCTGCAGTCGAGCGTTTTAAGCTCGCAGGAGCTTCTGAAGCTGACATTTCAATGGTTCTAAAGAACCATTGCTCTAATGGAGATGCAAGGGACGGAGATGAGAAAAAGATTCAGAACTCAGAACCCAATAAGGCTGTTGAAACAGAGAAGACCAATGACGCCAGTCAAGTATGA 2313 0.4587 MGKSGGRKKKGGSNQVSVDNSTPSANGGVELDSSIFLKRAHELKEEGNRRFQNKDYAGALEQYENALRLTPKIHPDRAVFHSNRAACLMQMRPIDYETVIAECTMALQVQPQFVRALLRRARAFEAIGKYEMAMQDVQVLLGADPYHRDALEIAQRLRTALGPRLEAQQDLQSRPSPAALGASAVRGAPISGLGPCLPARPVPKKAANSVVGSVASLNSKLEKSQSSLLTENGPDTKSQLPKLALKPSNGSARSPNTRKENQKELSSHSSTAHGQGSEVVIRWRPLKLVYDHDIRLSQMPMNCSFRILRHIVSKRFPSSKSVLIKYKDNDGDLVTITSTDELRLAESSVDSHLLKEPEADKSDSFGILRLHIVEVGPEQEPPLLEEEEVKPVESEGIKGDESASHTSLSETVSEAADTEVDKTVKEAPKEKPAATEDAECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTGEEAQDLFDKAASKFQEVAALAFFNWGNIHMCAARKRIPLDESAGKEAVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKMDLSGWDSTETLKLFDGAEEKMKAATDMWEKLEEQRANELKDPNASKKEELLRRRKKQGGAAEGETSTVGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGLGGWKKNMDAAVERFKLAGASEADISMVLKNHCSNGDARDGDEKKIQNSEPNKAVETEKTNDASQV 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1615 770 MobiDBLite consensus disorder prediction 378 438 - -
Glsi03g1615 770 Pfam PB1 domain 283 373 IPR000270 GO:0005515
Glsi03g1615 770 PANTHER PROTEIN CLMP1 1 763 IPR044517 -
Glsi03g1615 770 ProSiteProfiles PB1 domain profile. 283 375 IPR000270 GO:0005515
Glsi03g1615 770 SMART tpr_5 78 113 IPR019734 GO:0005515
Glsi03g1615 770 SMART tpr_5 40 73 IPR019734 GO:0005515
Glsi03g1615 770 SMART tpr_5 114 147 IPR019734 GO:0005515
Glsi03g1615 770 Gene3D - 285 355 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 1 29 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 225 256 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 415 438 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 739 761 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 10 29 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 225 276 - -
Glsi03g1615 770 CDD PB1 286 355 - -
Glsi03g1615 770 Coils Coil 609 629 - -
Glsi03g1615 770 Gene3D Tetratricopeptide repeat domain 37 161 IPR011990 GO:0005515
Glsi03g1615 770 MobiDBLite consensus disorder prediction 629 669 - -
Glsi03g1615 770 SUPERFAMILY TPR-like 37 171 IPR011990 GO:0005515
Glsi03g1615 770 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Glsi03g1615 770 MobiDBLite consensus disorder prediction 383 400 - -
Glsi03g1615 770 SUPERFAMILY CAD & PB1 domains 277 350 - -
Glsi03g1615 770 SUPERFAMILY TPR-like 489 585 IPR011990 GO:0005515
Glsi03g1615 770 SMART PB1_new 283 375 IPR000270 GO:0005515
Glsi03g1615 770 MobiDBLite consensus disorder prediction 629 655 - -
Glsi03g1615 770 MobiDBLite consensus disorder prediction 738 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1615 Glsi-ChrGlsi03 78446255 78448567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1615 37 161 Calmodulin-binding Proteins AT3G25230 28.058 1.12e-08 56.6