Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1614 ATGAAGTTGGGTATATCCAAGGGGGGCATGTGTATGTCAAGCGAAGCGTCAGAATCCTTCACCGGCGGTGCTTTGCAGCTGCAGAAATCTCCTGCTAATGGAGAGGATAACAAGGGGGATGGGGAGGAGATATTAGTGCCTCCTCTGAACTTCGCGATGGTCGACAATGGCATCTTTAGGTCAGGCTTTCCTGATTCCGCCAACTTCGGATTCTTGAAAGCTCTTCGCCTCCGTTCCATCATATGTTTGTGCCTCGAACCGTATCCAGAAGCGAATTTAGAATTTTTGAAGGCTAATGGAATCAGGCTTTATCAATTCGGGATAGATGGCTGTAAGGAACCTTTTGTAAAGATCCCGGAGGATACAATTCGCGAAGCATTGAAAGTAGTCCTTGATGTAGGGAACCATCCGCTGATAATTCATTGCAAACGAGGGAAGCACCGCACTGGTTGTCTTGTGGGATGCTTAAGAAGATTGCAAAGATGGTGTCTGTCATCTGTTTTTGATGAGTACCAAAGGTTTGCAGGTGCCAAAGCCAGATTGTCAGACCAGAGGTTTATAGAATTGTTTGATATATCTAGTCTGAAGCACCGGCCATCGTCGTTTTCATGCTCTAGGAAATAA 624 0.4583 MKLGISKGGMCMSSEASESFTGGALQLQKSPANGEDNKGDGEEILVPPLNFAMVDNGIFRSGFPDSANFGFLKALRLRSIICLCLEPYPEANLEFLKANGIRLYQFGIDGCKEPFVKIPEDTIREALKVVLDVGNHPLIIHCKRGKHRTGCLVGCLRRLQRWCLSSVFDEYQRFAGAKARLSDQRFIELFDISSLKHRPSSFSCSRK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1614 207 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 45 192 IPR029021 -
Glsi03g1614 207 Gene3D Protein tyrosine phosphatase superfamily 44 194 IPR029021 -
Glsi03g1614 207 Pfam Tyrosine phosphatase family 45 200 IPR004861 -
Glsi03g1614 207 ProSitePatterns Tyrosine specific protein phosphatases active site. 140 150 IPR016130 GO:0016311|GO:0016791
Glsi03g1614 207 CDD PFA-DSP_Siw14 45 191 - -
Glsi03g1614 207 FunFam probable tyrosine-protein phosphatase At1g05000 44 194 - -
Glsi03g1614 207 PRINTS Plant and fungal dual specificity phosphatase signature 101 115 IPR020428 GO:0016791
Glsi03g1614 207 PRINTS Plant and fungal dual specificity phosphatase signature 45 62 IPR020428 GO:0016791
Glsi03g1614 207 PRINTS Plant and fungal dual specificity phosphatase signature 82 95 IPR020428 GO:0016791
Glsi03g1614 207 PRINTS Plant and fungal dual specificity phosphatase signature 118 132 IPR020428 GO:0016791
Glsi03g1614 207 ProSiteProfiles Dual specificity protein phosphatase domain profile. 50 204 IPR020422 GO:0006470|GO:0008138
Glsi03g1614 207 PANTHER TYROSINE-PROTEIN PHOSPHATASE 38 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1614 Glsi-ChrGlsi03 78440570 78444381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1614 18 207 Protein tyrosine phosphatase (PTP) family AT4G03960 66.842 1.82e-95 275