Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1607 ATGGCCGGCTCATGCTTCCACGCGCTTCGCATAAGGAGGTCGAAGAGTAAACCTCTGGCGGAGCCGTCTTCGTCCAAGACCGGGATGGATTCTGACGTGGTGAATTTGGAAAGGAAGAGATTCGATAGCTTGGAATCGTGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAGGCTTCGAACGAGGATCAGGAGGAATGGACGGCTGATCTTTCGCAGCTTTTTATAGGGAACAAGTTCGCTTCTGGAGCTCATAGTCGGATTTACCGTGGGATTTACAAGCAGAGAGCAGTGGCCGTGAAAATGGTGAGGATTCCCACACAGGACGAGGAGAAAAGAGAACTGCTAGAGAAGCAATTTACGTCTGAAGTGGCTTTGCTTTCACGTCTCTTTCATTCTAACATAGTGCAGTTTATCGCAGCTTGTAAAAAACCGCCCGTGTACTGTATCATCACAGAGTACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAGCCATACTCTCTTTCTACAGAAACAATACTAAGGTTAGCTCTTGACATATCTAGAGGTATGGAGTACCTTCATTCACAAGGCGTGATTCACAGAGACCTCAAATCAAATAACTTGCTTCTCAATGATGACATGAGGGTGAAGGTGGCTGATTTTGGCACGTCATGTCTTGAAACACGATGTCGGGAGACCAAAGGAAACATGGGGACCTATCGTTGGATGGCACCAGAGATGATTAAGGATAGACCTTATACCCGGAAAGTTGATGTGTATAGTTTTGGAATTGTGCTTTGGGAGCTCACAACCTGTTTGCTTCCCTTCCAAGGAATGACCCCTGTGCAAGCTGCTTTTGCTGTGGCTGAGAAGAACGAAAGGCCTCCACTACCAGCTAGTTGTCAGCCGGCACTTGCACATCTGATAAAGCGTTGCTGGTCAGCAAACCCCTCAAAGCGACCAGATTTCAGTGACATTGTATCCGCTTTGGAGAAGTATGATGAGTGTGTGAAGGAGGGCCTACCTCTAACCCATCATTCAAGGCTTGTCAGTGGTAGTAACGCCATTATTGAACGCTTAAAAGGCTGTGTTTCCATGATCTCCTCTATACCTGTACATGCCTGA 1125 0.4684 MAGSCFHALRIRRSKSKPLAEPSSSKTGMDSDVVNLERKRFDSLESWSMILDSENVETWEASNEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEEKRELLEKQFTSEVALLSRLFHSNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDDMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKDRPYTRKVDVYSFGIVLWELTTCLLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVSALEKYDECVKEGLPLTHHSRLVSGSNAIIERLKGCVSMISSIPVHA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1607 374 FunFam serine/threonine-protein kinase HT1 159 351 - -
Glsi03g1607 374 Gene3D Transferase(Phosphotransferase) domain 1 159 348 - -
Glsi03g1607 374 Pfam Protein tyrosine and serine/threonine kinase 78 330 IPR001245 GO:0004672|GO:0006468
Glsi03g1607 374 PRINTS Tyrosine kinase catalytic domain signature 154 167 IPR001245 GO:0004672|GO:0006468
Glsi03g1607 374 PRINTS Tyrosine kinase catalytic domain signature 238 248 IPR001245 GO:0004672|GO:0006468
Glsi03g1607 374 PRINTS Tyrosine kinase catalytic domain signature 301 323 IPR001245 GO:0004672|GO:0006468
Glsi03g1607 374 PRINTS Tyrosine kinase catalytic domain signature 192 210 IPR001245 GO:0004672|GO:0006468
Glsi03g1607 374 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Glsi03g1607 374 SUPERFAMILY Protein kinase-like (PK-like) 54 330 IPR011009 -
Glsi03g1607 374 ProSiteProfiles Protein kinase domain profile. 76 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1607 374 FunFam Serine/threonine-protein kinase isoform 1 66 158 - -
Glsi03g1607 374 CDD STKc_MAP3K-like 83 330 - -
Glsi03g1607 374 SMART serkin_6 76 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1607 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Glsi03g1607 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 69 333 - -
Glsi03g1607 374 Gene3D Phosphorylase Kinase; domain 1 65 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1607 Glsi-ChrGlsi03 78398922 78403312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1607 1 365 MAP Kinase Kinase Kinase AT1G62400 81.600 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Glsi03g1607 PK_Tyr_Ser-Thr 1.1e-67 CL0016