Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1580 ATGTCTATTATTGATATTCTCGCTGAAGATAGTGTTCCCCACAGCGGTGGTTCCGACCCCGATCAGTATTCTTTCTGTTCAAAACGCAAATTGGACGACTACCAACCTATCAATGGTCAGGAGCTCGACTTAATCTCTTTCAAGATGGTGGAAGACGAATCCGCAGCCGTGAAGCCCTTTTCCGATGGCAATCCTTACAACCCTATGGCCGCCTTTATGGCCGAAATCGACGCTCTTGTCAATGACGCTGCGCAATTCAGCTCGAAGTCAACCAAGTTGCAGTTTTTTGTTCGAATGATGTCCGGGGTTGGTACTATGGTAATGCAAGCTGATTCGCAGGATACTGTAAAATCGCTTCACGAGCATATCCAGAAAACTGTGGGAATTCCTATACATGAGCAGAGGTTGATATATAGGGGTAAGCAACTTCAGCATGAACAGACTCTGGCGGATTGTTCGATTCAGAACGATGCAAGTCTTGATTTAGTTGGGCGTATGCGCAGCACAGAGTACCCTCAAGCTTGGCAGATTGTTAACGATATGATTTCTCTTATTTACCGTCTCTGCAGAGGTCAAGTGGGAGAGGATGCTTCGCTAGCCATCAAGGAACTCTTGAACAATTACCTAAACATGACTCCCAAAACGGACAACGATTCTGCCGCCAGGTATTTTCAGATTTTTGTGTCTTCGTCTGCTGCGGAGGTGCTGGTTATGCTCTACCTTTCGCCCTACAGAGGTAACAAAGACTGTGCTGATTGTTGTATTAAACATTTTTTGAGTTCCTGTAGTACTGCCCTGTCTAAGCCATTGCATACTCAGTGTGCACGTGTTGTGTTGGAATTCTGTACATTGCTTAGAAGAGTGGGCTGTGAGGACCCTTTGTATCTCTATTGTCGGAGTAGTTTTGGGTCTCTGTTGGAGACTGCAGGTGGTTTTTCCTATAGTTCTGAGAAGGGGTTGATTTTAATGGATGACATTTTCCCCTTTGTTCGTGAGCTTGAAAATAGCTTGTTGAGGGATTTGGATTTGACTATGGAGTCCCCCACTTATGTAGGGTCACTGCTTGGCGATGTGCGGGATTTCAGAGCGTTCTTACTTCCATTAAGGACCGGAATCAGGGAGCAACAAGCTTTCAATGGTCCCTTTTCTTCAATGACCGATGAAAGACGTCATAAAAGCCTCTTACTTGGTGAAGAGATTGAACACCTTTATCTTATATTTCTTAACTTATTGAAGAAAATGGACAAGTGCCTTCAAAGTATGGAGAAGTTCTTTGCTGCAAATGACATTGTGGAAGAAAATCTTCTGTATTCTGAATGGAGTACTTATCTTTGCATCTTGAAGGAATTATATCACATTTCTAAGCTCTATGATGGTGCTGAAGAAGAATTTTGGTCAGTTTTGAGGCGTCAAAGAAATATGTTTTGTCTACTAATTATTCGATATGCTAAGAGAACTGATGATCATCAGTGGATTCTTGAGAACAAGAGTGTGACAAATTTTACGTCCAGGAGACATTTGGTTATGATGATGTTCCCTGAGGTAAAAGAAGATTATGAGGAATTGCATGAGATGCTTATTGACAGGTCTCAGTTGTTGACAGAATCATTTGAGTACATAGCAAGAGCAGAGCCCGAATCTTTGCACGCCGGTCTATTTATGGAATTCAAAAATGAGGAAGCTACAGGCCCGGGTGTACTGCGGGAGTGGTTTCTCTTGGTATGCCAAGCAATATTTAATCCCCAAAATGCTCTCTTTGTGGCATGCCCAAATGACCGTAGGAGATTTTTCCCTAATCCTGCATCTAAGGTGCATCCTCTGCACCTTGAGTACTTCAGCTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGACCGCATGTTTTTCTTGCAATTGGCTGGAAACACTATTACTTTACAAGATATACAGGATGCAGATCCTTACTTGTACAGTAGCTGCAAGCAGATATTGGAGATGGATGCTGATTTCATTGATTCGGATGCTTTGGGACTGACCTTTGTTAGAGAGGTGGAGGAATTAGGATACAGAAAGGTTGTCGAGCTTTGCCCAGGTGGGAAAAGCCTTGCTGTAAATAGTAAGAATAGGGAGAAGTATGTTGATCTTCTTGTACAGGATCGTTTTGTGACTTCAATATCTGAGCAGGTGTCACATTTTGCCCAAGGTTTTTCTGAAATTATTTGCAACTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCATGAAGATCTTGATTGGATGCTGCACGGGAGTCAGAATACCATTTCTGTTGAAGATTGGAAGGCGCATACCGACTATAATGGCTTTACAGAGACTGATCCTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGAAGAACAGAGGAAGGTTCTTCTATCTTTTTGGACATCTGTGAAGTATTTACCAGTTGAAGGTTTCCAAGGTTTAGCTTCCCGTCTCTACATTTACTGGTCGCCAGAACCTGCTGATCACCTTCCATCCTCTCATACATGCTTTTATCGGCTGTGTTTCCCGGCTTATCCATCCATGGCTGTCATGAAAGATCGTCTTAGAATCATCTCCCAAGAACACATTGGCTGCAGCTTTGATGTCCTTTATTCAAACCTAGATAAACACACCATGACCAAAAGACCTTCCAAGAACCACCATCTTCCACAAACTCGAGTAGCCGAGTGCTTACATATAGCTATATCCTCCATATACTGA 2763 0.4278 MSIIDILAEDSVPHSGGSDPDQYSFCSKRKLDDYQPINGQELDLISFKMVEDESAAVKPFSDGNPYNPMAAFMAEIDALVNDAAQFSSKSTKLQFFVRMMSGVGTMVMQADSQDTVKSLHEHIQKTVGIPIHEQRLIYRGKQLQHEQTLADCSIQNDASLDLVGRMRSTEYPQAWQIVNDMISLIYRLCRGQVGEDASLAIKELLNNYLNMTPKTDNDSAARYFQIFVSSSAAEVLVMLYLSPYRGNKDCADCCIKHFLSSCSTALSKPLHTQCARVVLEFCTLLRRVGCEDPLYLYCRSSFGSLLETAGGFSYSSEKGLILMDDIFPFVRELENSLLRDLDLTMESPTYVGSLLGDVRDFRAFLLPLRTGIREQQAFNGPFSSMTDERRHKSLLLGEEIEHLYLIFLNLLKKMDKCLQSMEKFFAANDIVEENLLYSEWSTYLCILKELYHISKLYDGAEEEFWSVLRRQRNMFCLLIIRYAKRTDDHQWILENKSVTNFTSRRHLVMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFSGRVIALALMHRVQVGIVFDRMFFLQLAGNTITLQDIQDADPYLYSSCKQILEMDADFIDSDALGLTFVREVEELGYRKVVELCPGGKSLAVNSKNREKYVDLLVQDRFVTSISEQVSHFAQGFSEIICNSKLQQFFFQSLEHEDLDWMLHGSQNTISVEDWKAHTDYNGFTETDPQISWFWEIVGRMSEEQRKVLLSFWTSVKYLPVEGFQGLASRLYIYWSPEPADHLPSSHTCFYRLCFPAYPSMAVMKDRLRIISQEHIGCSFDVLYSNLDKHTMTKRPSKNHHLPQTRVAECLHIAISSIY 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1580 920 FunFam E3 ubiquitin-protein ligase UPL5 768 883 - -
Glsi03g1580 920 ProSiteProfiles HECT domain profile. 544 884 IPR000569 GO:0004842
Glsi03g1580 920 SMART ubq_7 93 165 IPR000626 GO:0005515
Glsi03g1580 920 Gene3D - 85 181 - -
Glsi03g1580 920 Gene3D Hect, E3 ligase catalytic domain 767 882 - -
Glsi03g1580 920 CDD HECTc 523 882 IPR000569 GO:0004842
Glsi03g1580 920 SMART hect_3 542 882 IPR000569 GO:0004842
Glsi03g1580 920 Pfam Ubiquitin family 96 167 IPR000626 GO:0005515
Glsi03g1580 920 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 94 881 - -
Glsi03g1580 920 Gene3D Hect, E3 ligase catalytic domains 524 756 - -
Glsi03g1580 920 PRINTS Ubiquitin signature 104 124 IPR019956 -
Glsi03g1580 920 PRINTS Ubiquitin signature 125 145 IPR019956 -
Glsi03g1580 920 PRINTS Ubiquitin signature 146 167 IPR019956 -
Glsi03g1580 920 Gene3D Hect, E3 ligase catalytic domain 644 726 - -
Glsi03g1580 920 SUPERFAMILY Ubiquitin-like 94 180 IPR029071 -
Glsi03g1580 920 SUPERFAMILY Hect, E3 ligase catalytic domain 519 870 IPR035983 GO:0004842
Glsi03g1580 920 ProSiteProfiles Ubiquitin domain profile. 93 169 IPR000626 GO:0005515
Glsi03g1580 920 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 644 726 - -
Glsi03g1580 920 Pfam HECT-domain (ubiquitin-transferase) 573 875 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1580 Glsi-ChrGlsi03 78225484 78234780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1580 93 167 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 42.667 1.27e-13 67.0