Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1568 ATGGTTTCTCTGGAGGATTCTCACTCCATTTCCAATCGTTTCCCTTTAACCCAAAGCTACTACACTACCTCTTCTGTCAATTCTTCCTCCAAAGTTCACCGACACATCGGAAGGTCCATGCGAACCATACGCTCTAATTTTATCAAAGATGACCATAGCTGCTCCTTCACTGCCACAGCCACCGAGAAATCCACATGCCTATCGGAAAACTTGACCGATTCCGTCATCGATCTCAGGCTCGGTGAGCTCGCATCGCGGAACAACAAATCTGTCAAGTCTTCTGCCACGGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGCAGTAGCGATATTTCGGGTGAGCTGCAGAGGCTGGCGAGTTTGCCGTCGCCGGAGAATGTGCTGAAGAACGAGGGTGGTGAAGTGGAGCAGGAGCCGGAGCCGTGCCAAGGGTTTCTACAAAGAGAGAATTTTTCTACTGAGATTATTGAAAGTATTTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGTATCGACGGGCTACAGTCGACGTCGGTTGCCGTGAAGCGATCGGCTGCGGCTAAGCTCAGGCTATTGGCGAAGAACAGGGCTGATAATCGGGCTCTGATTGGTGAGTCCGGTGCGGTGCCCGCTTTGGTTCCCCTGCTTCGGTGCAGTGATCCATGGACGCAGGAACACGCCGTCACGGCGTTGCTGAATCTCTCGCTGCACGAAGACAACAAGATGCTGATAACCAATGCAGGAGCTATAAAGTCACTGATATATGTGCTTAAAACCGGAACGGAGACTTCGAAGCAGAACGCGGCATGTGCGCTATTAAGCCTTGCTTTGGTAGAAGAAAACAAGAGCTCCATTGGGGCTAGCGGGGCAATACCCCCGCTTGTTTCCTTGCTATTGAATGGTTCTAGCAGGGGAAAGAAGGACGCTCTGACGACACTGTATAAACTGTGTTCCATAAAGCAGAACAAAGAGAGGGCGGTGAGCGCTGGAGCGGTGAAGCCGCTTGTGGAGATGGTGGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTTAATAGTTTGGCAGGAATTCAGGAAGGGAAAGATGCAATTGTGGAAGAAGGTGGAATAGCTGCTCTTGTGGAGGCAATTGAAGATGGGTCTGTGAAGGGAAAGGAATTTGCTGTTTTGACGCTTCTACATCTATGTACTGACAGTGTGAGGAATAGAGGATTGCTTGTGAGGGAGGGTGGAATACCTCCTCTGGTTGCTCTTTCCCAGACTGGGAGTGTTCGAGCTAAGCATAAGGCTGAAACGCTCCTTGGATATTTGAGAGAATCAAGACAAGAAGCAGCATCTTCTTCAAGCCCTTAG 1383 0.5033 MVSLEDSHSISNRFPLTQSYYTTSSVNSSSKVHRHIGRSMRTIRSNFIKDDHSCSFTATATEKSTCLSENLTDSVIDLRLGELASRNNKSVKSSATEEELLDLSQAFSDFSACSSDISGELQRLASLPSPENVLKNEGGEVEQEPEPCQGFLQRENFSTEIIESISPEDLQPTVKICIDGLQSTSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNAACALLSLALVEENKSSIGASGAIPPLVSLLLNGSSRGKKDALTTLYKLCSIKQNKERAVSAGAVKPLVEMVAEQGTGMAEKAMVILNSLAGIQEGKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLHLCTDSVRNRGLLVREGGIPPLVALSQTGSVRAKHKAETLLGYLRESRQEAASSSSP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1568 460 Gene3D - 156 315 IPR011989 -
Glsi03g1568 460 SUPERFAMILY ARM repeat 171 449 IPR016024 -
Glsi03g1568 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 214 256 IPR000225 GO:0005515
Glsi03g1568 460 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Glsi03g1568 460 SMART arm_5 203 243 IPR000225 GO:0005515
Glsi03g1568 460 SMART arm_5 244 284 IPR000225 GO:0005515
Glsi03g1568 460 SMART arm_5 409 449 IPR000225 GO:0005515
Glsi03g1568 460 SMART arm_5 285 325 IPR000225 GO:0005515
Glsi03g1568 460 SMART arm_5 367 407 IPR000225 GO:0005515
Glsi03g1568 460 FunFam U-box domain-containing protein 4 313 454 - -
Glsi03g1568 460 FunFam U-box domain-containing protein 4 160 312 - -
Glsi03g1568 460 Pfam Armadillo/beta-catenin-like repeat 287 325 IPR000225 GO:0005515
Glsi03g1568 460 Pfam Armadillo/beta-catenin-like repeat 205 242 IPR000225 GO:0005515
Glsi03g1568 460 Gene3D - 316 447 IPR011989 -
Glsi03g1568 460 PANTHER U BOX DOMAIN-CONTAINING 134 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1568 Glsi-ChrGlsi03 78151988 78154108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1568 61 452 U-box Gene Family AT2G23140 41.878 5.27e-84 269