Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1565 ATGAATGTGGGTTGTAGGTATTCTCTGGAAAGAAAGGAAAAAAGAGGGCCTCTCGCCCTCTTTGCTTATTATGCTTTCTCTCAGATCTTAGATTGTATCAATTTTTCATCTGGGTTGTCTTCATTTGGTGAGTTTTCCTTGCCAATGTTTTTTCTGCTCAAAATGGAAATGGACCCTGGCAAACTTTTCATTGGCGGAATTTCCTGGGACACAAATGAAGAACGACTCAGATTGTACTTCCAGAATTTTGGAGATGTAGTGGAAGCTGTGATAATGAAGGATCGGACGACCGGCCGTGCCCGTGGTTTTGGATTTATTGTTTTTGCCGATCCTTCTGTTGCTGAACGAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTCCCTAGAGATGATCAGAATGTTTTGAACAGAAGTAACAACAGCATTCATGGATCACCTGGTCCTACCCGCACAAAGAAGATATTTGTTGGAGGTCTAGCACCCACGGTTACTGAGAGTGACTTTAAGAAATACTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCACAACACTCAAAGGCCAAGAGGTTTTGGATTCATCACCTTTGATTCTGAGGAAGCAGTAGATAAAGTTCTTTATAAAACTTTTCATGAACTGAATGGTAAAATGGTCGAGGTTAAGCGGGCTGTTCCAAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAATTAGCTGGATATAACTATGGTTTAAGTAGACTCAGTGGCTTTCCTAATGGTTTCATTCAAGGATACAATCCAAGCTTGGTTGGAGGGCAAGGACTTAGAGCAGATGGCAGATTTAGTCCTGTTACTGTTGGTCGGAGTGGATATCCTCCATTGAGTCCTAGTTATGGGACAGGACTCAATTTTGAGCCAGCATTGAGTCAAAATGGAAATTCAAACTTTACTTCTACTTTTATCTTAGGACGGTCGATGAACCCTTCATATAATGGAAGTTCAAGCAGGTACCAGAATGCCATGGGGTATTCAAGTACAGGAGGAGGCAGCAGTTCAACCTTAAGTTCAACAAATCAGAATTTGTGGGGGAATGAAAATCTTAACTATGCTACTAACCCTACAAATTCTGATGTTTTTCTTAGGTATGGAAGTCAAAATTCAAGCATAGGTTCTTTTGGACACATTGGAACAATTTGGAGTTCTTCCCCTAGTGCAGAACAAGCTGGAACTGTTGGCTCTGGCTATGGTAAGGGCAGTTTTAATTATGGCTCTGGAGATGTTAATTTTGGGCCAAAAGCAGTAGGATATGGAAAAGGTGGTGAAACCGTTGTTGCATCAGCGCCATCATATGCTCTATCAAATGGCAGTTATGATGGGGTATATAAAGACATTTATGAAGGTGGATCATATTTTGGAGACAAGACCTGGAGATCGTCACCTTCAGAACTAGAAGATACTGGCTCTCTTGGTTATGGCCTTGGAAATGCTGTTTCAGATTTAATGACCAAAGGCTCTGGTGGCCACATTGGGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCCTAG 1593 0.4131 MNVGCRYSLERKEKRGPLALFAYYAFSQILDCINFSSGLSSFGEFSLPMFFLLKMEMDPGKLFIGGISWDTNEERLRLYFQNFGDVVEAVIMKDRTTGRARGFGFIVFADPSVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNRSNNSIHGSPGPTRTKKIFVGGLAPTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLYKTFHELNGKMVEVKRAVPKELSPGPSRGQLAGYNYGLSRLSGFPNGFIQGYNPSLVGGQGLRADGRFSPVTVGRSGYPPLSPSYGTGLNFEPALSQNGNSNFTSTFILGRSMNPSYNGSSSRYQNAMGYSSTGGGSSSTLSSTNQNLWGNENLNYATNPTNSDVFLRYGSQNSSIGSFGHIGTIWSSSPSAEQAGTVGSGYGKGSFNYGSGDVNFGPKAVGYGKGGETVVASAPSYALSNGSYDGVYKDIYEGGSYFGDKTWRSSPSELEDTGSLGYGLGNAVSDLMTKGSGGHIGAYAVANRQSNRGIAA 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1565 530 FunFam Heterogeneous nuclear ribonucleoprotein 1 157 244 - -
Glsi03g1565 530 CDD RRM2_Hrp1p 161 238 - -
Glsi03g1565 530 SUPERFAMILY RNA-binding domain, RBD 56 154 IPR035979 GO:0003676
Glsi03g1565 530 Gene3D - 157 243 IPR012677 -
Glsi03g1565 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 136 IPR000504 GO:0003723
Glsi03g1565 530 CDD RRM1_hnRNPA_hnRNPD_like 62 132 - -
Glsi03g1565 530 Gene3D - 59 142 IPR012677 -
Glsi03g1565 530 SMART rrm1_1 61 132 IPR000504 GO:0003723
Glsi03g1565 530 SMART rrm1_1 161 233 IPR000504 GO:0003723
Glsi03g1565 530 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 57 526 - -
Glsi03g1565 530 SUPERFAMILY RNA-binding domain, RBD 153 257 IPR035979 GO:0003676
Glsi03g1565 530 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Glsi03g1565 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 128 IPR000504 GO:0003723
Glsi03g1565 530 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 220 IPR000504 GO:0003723
Glsi03g1565 530 FunFam Heterogeneous nuclear ribonucleoprotein 1 59 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1565 Glsi-ChrGlsi03 78136198 78141134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1565 62 239 Eukaryotic Initiation Factors Gene Family AT2G36660 32.105 9.89e-15 75.1