Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1562 ATGATAACAAAAATGTCTTACGATCCTAAAGATGCTGCTTTCCTCGAGGTTGACCCAACTGGCCGATATGGGAAGTACCATGCCTTGCTCGGAGATGGTGCAATGAAGATGTATCATGCTTTTGATCAACTAGAAGGCAAAGAGGTAGCTTGGAATCAAGTCTCTTTGAAAAGATTCATCAACGACGGAGCCATGATGGAAAGGCTCTACTATGAGTTTGAGCTTCTGAGAAGTTTGAAGAACGAGCATATCGTTACCTTCTACCATGCATGGATAGACACAGAGAAGAAAACTTTGAACTTTATAACTGAAGTTTCTGTTTCTGGGAATCTCAGAGATTACAGGAAGAAGCATTGTCATCTTTCAATGGTAGCTGTTAAGAAGTGGTGCAGGAAAATACTGATGAGGGGTTTGGAATATCTTCAAGGTGATGAACAAGTTGAGAGACCGTCTGCGTTTGAACTCTTTTGGGATCCCTCTTTTGATGTGCTTGAGGACGAGGACCGTGACAGTAATACTGAAGAATTTTCCTTTTTCCATTTGTGTTAA 549 0.4117 MITKMSYDPKDAAFLEVDPTGRYGKYHALLGDGAMKMYHAFDQLEGKEVAWNQVSLKRFINDGAMMERLYYEFELLRSLKNEHIVTFYHAWIDTEKKTLNFITEVSVSGNLRDYRKKHCHLSMVAVKKWCRKILMRGLEYLQGDEQVERPSAFELFWDPSFDVLEDEDRDSNTEEFSFFHLC 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1562 182 Pfam Protein kinase domain 29 141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1562 182 SUPERFAMILY Protein kinase-like (PK-like) 26 142 IPR011009 -
Glsi03g1562 182 Gene3D Phosphorylase Kinase; domain 1 9 104 - -
Glsi03g1562 182 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 13 143 - -
Glsi03g1562 182 FunFam Probable serine/threonine-protein kinase WNK1 9 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1562 Glsi-ChrGlsi03 78126879 78127844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1562 8 142 MAP Kinase Kinase Kinase AT5G55560 60.294 1.14e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Glsi03g1562 Pkinase 3.8e-10 CL0016