Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1542 ATGCCTATGGGTGGTGATAACGAGGCCCAACAATCCTTGCTTCCTCATGTCAACGAGAAGATCAGTGATCTCCAAAGAAGACAACCCAGGCGTGGTAGTGCTTCTAATAACTTCAATCACCCTGCAGAATCTGCAGCTACAAAACCAGATTTCCAATCCCAGAAAGTGCTATTGCTCCTAGCAGCCTACCTAGGCATAGGCACTCTTTGTTTCTTCCTCATCAGGCATGAGATAAAGGGAATAGAGACCAATGGCTTTCTTGATGCCATTTACTTCTGTGTTGTGACTATGACCACAGTGGGGTATGGAGATCTTGTTCCCAATAGCTCACTAGCAAAGCTTCTTGCTTGCATCTATGTCTTCTCTGGTATGGCTCTTGTTGCGATCATTCTAAGCAAAGCAGCAGATTACTTTGTTGAGAAGCAAGAGATCTTACTGGTTAGAGCCATTCACATAGGTGAAAAAGTAGATACATCGCAGCTTCTGAAGGAGATTGAGGCTCATAAGGTCAGATACAAGTTCATTCTTGCATCAGCAACTCTTGTGGTGCTTATGATTGCAGGAACTGTTTTTCTATGTTTTGTTGAGAATCTTGGGGTTGTGGATGCTTTCTATTGTGTTTGTTCCACTGTGACTACTCTGGGATATGGGGATAAGAGCTTCTCAACTACTGTTGGTCGTGTTTTTGCTGTTTTCTGGATATTAAGCAGCACCATTTGCTTGGCTCAGTTCTTTCTCTATCTTGCTGAACTATACACTGAAGGTAGACAAAGATCATTGGTCAAAATGGTTCTTACAAGGAAATTTTCTCGCTCTGATCTTGAGGCTGCAGATCTTGATCAAGATAAAGTTGTTAGTGTTGCAGAGTTCATTGTATACAAGTTGAAGGAAATGGGAAAGATCAGGCAAGATGATATTTCAATTGTGATGGAGACTTTTAGAAAACTTGACTATGATAAGACCGGATCTTTGACTGAAGCTGATATCAAATTATGTGAATCATCTTAA 1008 0.4117 MPMGGDNEAQQSLLPHVNEKISDLQRRQPRRGSASNNFNHPAESAATKPDFQSQKVLLLLAAYLGIGTLCFFLIRHEIKGIETNGFLDAIYFCVVTMTTVGYGDLVPNSSLAKLLACIYVFSGMALVAIILSKAADYFVEKQEILLVRAIHIGEKVDTSQLLKEIEAHKVRYKFILASATLVVLMIAGTVFLCFVENLGVVDAFYCVCSTVTTLGYGDKSFSTTVGRVFAVFWILSSTICLAQFFLYLAELYTEGRQRSLVKMVLTRKFSRSDLEAADLDQDKVVSVAEFIVYKLKEMGKIRQDDISIVMETFRKLDYDKTGSLTEADIKLCESS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1542 335 MobiDBLite consensus disorder prediction 28 46 - -
Glsi03g1542 335 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 60 307 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi03g1542 335 FunFam Two-pore potassium channel 1 154 262 - -
Glsi03g1542 335 Pfam Ion channel 180 252 IPR013099 -
Glsi03g1542 335 Pfam Ion channel 60 139 IPR013099 -
Glsi03g1542 335 FunFam Calcium-activated outward-rectifying potassium channel 1 49 145 - -
Glsi03g1542 335 SUPERFAMILY Voltage-gated potassium channels 55 145 - -
Glsi03g1542 335 Gene3D - 51 144 - -
Glsi03g1542 335 ProSitePatterns EF-hand calcium-binding domain. 278 290 IPR018247 -
Glsi03g1542 335 ProSitePatterns EF-hand calcium-binding domain. 317 329 IPR018247 -
Glsi03g1542 335 Gene3D - 240 332 - -
Glsi03g1542 335 MobiDBLite consensus disorder prediction 24 46 - -
Glsi03g1542 335 SUPERFAMILY Voltage-gated potassium channels 167 302 - -
Glsi03g1542 335 PRINTS Two pore domain K+ channel signature 212 221 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi03g1542 335 PRINTS Two pore domain K+ channel signature 95 123 IPR003280 GO:0005267|GO:0016020|GO:0071805
Glsi03g1542 335 Gene3D - 180 239 - -
Glsi03g1542 335 SUPERFAMILY EF-hand 268 330 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1542 Glsi-ChrGlsi03 77938357 77939789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1542 39 335 Ion Channels AT5G55630 59.603 4.66e-130 374