Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1538 ATGTTGAATGTGGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGAAGGGTTTTCAGGTTCAAGACCTTTGGGGAGCCTGGTTATCCGGTGGAATTTACAGGGCCATTTCGTGAGAATGTGAATGCACTGCTTGAGTTTGCAAACTTGGAGACTAAATTAGGGTTGGGAATGCCCATCTGGTCTTTCCAACTTGAGGTTCATCGCCATCCTCCTTCTCATGTCTTCTTGTTTGTGATTGAAGAACCAACTGAGGCATCTCTCAACCGTCACTGCAAGCATTGTCAATATGTTGGATGGGGGAGCCATTTCATTTGCAATAAGAAGTATCACTTTCTTTTGCCATCAAAGGAGACACTGGCTGCTAGTCTGAGTTGTGAAGTACCATGTGAAGCAATTGCTGCTACGAACAGTAATAATGGTAAGTCCAAGTTAATAGAATTACAGGGCCATATGATGCAAGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTATGTGTCAATGGGCTGGAAACGGGATCGGATTTGGCTGGACACCAGATCATGGAGTTCTGGGATCGCTTGTGCACCGGATTGCAAGCAAGGAAAGTGAGTGTGAACGACATTTCACAGAAAAGAGGCATGGAGCTGAGACTTGTCAATGGAATAGCACATAGTGAGCCATGGTTTGGTCGCTGGGGCTACAAATTTGGGCGAGGAAGCTTTGGTGTCACTCAATCAACCTACCAAAAGGCCTTAGAGGCAATAAGAAGCATGCCCCTTTACCTGCTCATTCATCACGTTGGCACCTCCTACCATGGTATCCCAGCCATCTTCTCAAGGTATCAAACACTTTCAGATCAGTCCCTAGTCACCCTTGGTGACTTGTTTTACTTCATGTTAGAGCTCAAATCTCGGCTTCCTCGTGAAAATTGCGTGGATTCCTATAACACAGGCATCCTAGTTGAAGCCAATTGCCGTTGGTCCCCAAAGAGGATTGAAATGGCGGCTAGGGTTATTGTTGAGGCATTGAAAAGAGCTGAGCTGAAATGGATTTCAAGGCAAGAAGTTAGGGATGCTGCTCGAGCCTACATCGGGGACACCGGTTTGCTAGATTTCGTACTGAAATCACTAGGAAACCATATTGTTGGGAACTACTTGGTTCGCCGAAGCTTGAATCCGGTCACAAAAGTCCTAGAATATTGCTTAGAAGACATTTCCAATGTTTTTCCTAGTCATCAAGAAGGATTAGTCATGAACAACAGAATAAAGGACAGGTACAAGATCACTAGGGCACAAGTCATGAAGGACATGCTTTTTGTGTACAAATACATCCTTAAAGACCCCAAACAAATACCAGGAAATGAGATTTTCTCAGCAATTCCATTGGCAGCAAGAATAATTCTAGACACAAAGTATTTTGTCAAAGAGTATTTTGGGGAGCTTCCTTTTCAGGTTGACTTAGGGATGGAAGGAAAATTAAGTCTTTATTGTACAATCATATTGAGAAATTACATCAATGCAGACACAGATATAACCAAGGCAATGCCACCCTATGAGTGCATCACATTGAAAAGCAATGCCACCATTAATGACTTGAAGCTAGAAGTTGAAAGGAATTTCAGAGAAATTTATTGGGGATTGAGGAGTTTTGCTGTGGATTCGATTGAGAATTTGAAGATTGCAAATGGGAATGATCTGGTTTTTGGTATAGTTGAAGTGGGTCGAAAATTGGTCCTTGAAGGGTGGATTAATAGTGACATAGGGAGGAATATAAATGGAGAAATTTATGAAAGTAACGTAAATAATGGGATTATCGTGGAGTGCAGTTGTGGAACTAAAGAAGATGATGGGGAGAGAATGGTTTCTTGTGATATTTGTGAGACTTGGCAGCATACAAGGTGTGTTCGCATTCCAAATGATGAAGAAGTTCCTTCTATATTTCTCTGCAAAAGGTGTGAGCAAGAAATTGTTATGTTCCCTTCGCTGCCATAG 1977 0.4234 MLNVDVIGNKKRKRCGRVFRFKTFGEPGYPVEFTGPFRENVNALLEFANLETKLGLGMPIWSFQLEVHRHPPSHVFLFVIEEPTEASLNRHCKHCQYVGWGSHFICNKKYHFLLPSKETLAASLSCEVPCEAIAATNSNNGKSKLIELQGHMMQGVFHSNGFGHLLCVNGLETGSDLAGHQIMEFWDRLCTGLQARKVSVNDISQKRGMELRLVNGIAHSEPWFGRWGYKFGRGSFGVTQSTYQKALEAIRSMPLYLLIHHVGTSYHGIPAIFSRYQTLSDQSLVTLGDLFYFMLELKSRLPRENCVDSYNTGILVEANCRWSPKRIEMAARVIVEALKRAELKWISRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVFPSHQEGLVMNNRIKDRYKITRAQVMKDMLFVYKYILKDPKQIPGNEIFSAIPLAARIILDTKYFVKEYFGELPFQVDLGMEGKLSLYCTIILRNYINADTDITKAMPPYECITLKSNATINDLKLEVERNFREIYWGLRSFAVDSIENLKIANGNDLVFGIVEVGRKLVLEGWINSDIGRNINGEIYESNVNNGIIVECSCGTKEDDGERMVSCDICETWQHTRCVRIPNDEEVPSIFLCKRCEQEIVMFPSLP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1538 658 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 652 - -
Glsi03g1538 658 SMART PHD_3 602 648 IPR001965 -
Glsi03g1538 658 CDD PHD_MMD1_like 602 647 - -
Glsi03g1538 658 SUPERFAMILY FYVE/PHD zinc finger 589 650 IPR011011 -
Glsi03g1538 658 Pfam PHD-finger 603 649 IPR019787 -
Glsi03g1538 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 590 652 IPR013083 -
Glsi03g1538 658 ProSitePatterns Zinc finger PHD-type signature. 603 647 IPR019786 -
Glsi03g1538 658 ProSiteProfiles Zinc finger PHD-type profile. 600 650 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1538 Glsi-ChrGlsi03 77917256 77921489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1538 10 658 PHD Transcription Factor Family AT5G22260 53.333 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi03g1538 PHD 2.2e-09 CL0390