Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1532 ATGGGGAATGTAAATGCGAGAGAAGATGGGAATGGGAGTCCATCAGGGGCTGAAGAAGAAGGTGCAGGCAGTGTGCAGGAGGGCATGTCTGCACCGGATGGGGTTGGGAACGCTGGCTATCATGCGCATGCTGTGTCTTCTGAGTTGATGGGTCAGTCGCCCCCGACTAGCCCTAGAGCTACCCAATCTCCATTAATGTTCACTCCACAAGTCCCGGTGCTTCCACTACAAAGACCTGATGAGATGCATGTTCCAAGTCATTCTTGGATGCAAGTTACCTCAGCATATGAAGATATGTGCAGTGAACAAGGAATTCCAACGATGATTACTTGGAGTCATGATGGGAAAGAAGTAGCTGTGGAGGGATCATGGGATAATTGGAAAACAAGAATGCTCTTGCAGAGATCAGGGAAAGACTTCACTATAATGAAGGTACTACCATCTGGTGTTTATCAGTACAGATTTATAGTTGATGGACAGTGGAAGTATGCTCCTGACTTGCCTTGGGCTCAAGATGATGCTGGCAATGCCTACAACATTTTGGACTTGCAGGATTATGTTCCCGAAGACATTGAAAGCATTTCTGGTTTTGAACCTCCTCAGTCACCAGACTCTAGTTATAGCAACTTACAACTTGGTTCTGAAGATTATGCTAAGGAGCCACCATTGGTTCCTCCGCACTTGCAAATGACGCTGCTTAATGTGCCTGCTACAAATTTGGAAATTCCACCTCCTTTATCAAGACCTCAGCATGTAGTGCTCAATCATCTTTACATGCAGAAAGGAAAGAGCAGCCCTTCAGTGGTTGCACTTGGCACGACACATCGGTTTCTAGCCAAATATGTCACTGTGGTTCTGTACAAGTCTTTGCAGAGGTAA 879 0.4608 MGNVNAREDGNGSPSGAEEEGAGSVQEGMSAPDGVGNAGYHAHAVSSELMGQSPPTSPRATQSPLMFTPQVPVLPLQRPDEMHVPSHSWMQVTSAYEDMCSEQGIPTMITWSHDGKEVAVEGSWDNWKTRMLLQRSGKDFTIMKVLPSGVYQYRFIVDGQWKYAPDLPWAQDDAGNAYNILDLQDYVPEDIESISGFEPPQSPDSSYSNLQLGSEDYAKEPPLVPPHLQMTLLNVPATNLEIPPPLSRPQHVVLNHLYMQKGKSSPSVVALGTTHRFLAKYVTVVLYKSLQR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1532 292 Gene3D Immunoglobulins 98 187 IPR013783 -
Glsi03g1532 292 SMART AMPKBI_2 200 290 IPR006828 GO:0005515
Glsi03g1532 292 CDD E_set_AMPKbeta_like_N 106 182 - -
Glsi03g1532 292 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 218 288 IPR006828 GO:0005515
Glsi03g1532 292 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 292 IPR043554 -
Glsi03g1532 292 MobiDBLite consensus disorder prediction 1 39 - -
Glsi03g1532 292 Gene3D - 194 290 - -
Glsi03g1532 292 SUPERFAMILY E set domains 104 190 IPR014756 -
Glsi03g1532 292 Pfam Glycogen recognition site of AMP-activated protein kinase 105 184 IPR032640 -
Glsi03g1532 292 SUPERFAMILY AMPKBI-like 187 289 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1532 Glsi-ChrGlsi03 77876226 77879236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1532 71 185 Protein tyrosine phosphatase (PTP) family AT3G01510 29.752 3.23e-07 49.3