Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1529 ATGGCGGATACAAAATCACTTCCAAGGACTTCCGGACTTGGTTTAGGAAGCGTTGAGAAGTGGGTAAGTGAGTCAATGGCTGAGTCAGACAACGAGTCGGGCGGTCATAGCGGAGGGACGGGGAGAGAGCAAGAGAGGTTGCTTCCGATAGCGAACGTGAGCAGAATCATGAAGAAAGCCTTACCGGCGAACGCGAAGATCTCGAAGGAAGCCAAAGAGACGGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGACAAGTGCCAGAAAGAGAAGAGGAAGACGATCAACGGCGACGATCTGGTGTGGGCCATGACCACCCTGGGCTTCGAAGATTATGTGGAGCCCTTGAAGATTTACCTCCACAAGCACAGGGAGATGGAGGGCGAGAAGATTGCTATGGTGGGGATGAGGCAACACATGCACCCGCAGGGTGATCATGATCTTCTGCAGAGGGATCACGGGAGTAATCGTGATGATCAAGCGGGGGTTTTGGGTGGTGGGGCTTATGGTAATTCTACTATGATGATGATGAACATGTTTGGATCTGGAACTGGATCATCGCCGTCATCTGAAGGAAGACCTAGGTAG 609 0.5271 MADTKSLPRTSGLGLGSVEKWVSESMAESDNESGGHSGGTGREQERLLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFVTGEASDKCQKEKRKTINGDDLVWAMTTLGFEDYVEPLKIYLHKHREMEGEKIAMVGMRQHMHPQGDHDLLQRDHGSNRDDQAGVLGGGAYGNSTMMMMNMFGSGTGSSPSSEGRPR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1529 202 ProSitePatterns NF-YB/HAP3 subunit signature. 78 94 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi03g1529 202 Gene3D Histone, subunit A 37 168 IPR009072 GO:0046982
Glsi03g1529 202 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 150 IPR027113 GO:0001228|GO:0006355|GO:0016602
Glsi03g1529 202 MobiDBLite consensus disorder prediction 150 165 - -
Glsi03g1529 202 MobiDBLite consensus disorder prediction 22 44 - -
Glsi03g1529 202 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 47 111 IPR003958 -
Glsi03g1529 202 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Glsi03g1529 202 PRINTS CCAAT-binding transcription factor subunit A signature 113 131 - -
Glsi03g1529 202 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Glsi03g1529 202 SUPERFAMILY Histone-fold 44 155 IPR009072 GO:0046982
Glsi03g1529 202 MobiDBLite consensus disorder prediction 150 174 - -
Glsi03g1529 202 FunFam Nuclear transcription factor Y subunit B-3 36 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1529 Glsi-ChrGlsi03 77863494 77865324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1529 26 142 CCAAT-HAP3 Transcription Factor Family AT4G14540 80.833 5.09e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Glsi03g1529 CBFD_NFYB_HMF 9.2e-27 CL0012