Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1526 ATGGACTTCTTCACCGGGGACGATTTCCCTTGCCACGAGGCCCCATTTCTCGAGACCAGCGACCTCCTTTATGCTCAGTCAACGGCTCCGATTCACCCACTCGAGATCGTCGCCCACCGTCAGAACCCGCCGCCGCAGAAGCTCCGCCCCATCAGGTGCAAGGACAGGTCTTCGCCTGGGGGCAAGAATCTTGAGAATGGAAGGCTCGCGGTGGCGTCCCCCGATGTTGATTACCTTACTAGTCAGCTATGCGCTGTTCCAGGCGAGTCAATTCAGAACCTTGAGTGTCTGGGTCAGCAAGTAGAACCTAGGGAGGCGCTGAGGAAGGAGGATTGCGGTTATGTTGCAGGTATTGCTTGCCTTCCGATGGGGAATCCGGTGGGACCCGGGTCGGGTCGGGTCCCGATTTCTGAGGCTTGTCAGTTGGAGCAGGAATCTGGCTCATCTTGGGATGATGATGACAATTCATCTGGAAGTGTGAAGGCACCTGGGAGTGGAAAGAGAAGGAAGAGGACAATGAGAAGGCTCGAAATTTTTCTAGAAAGTTTGGTAATGAAAGTGATGGAAAAGCAAGAGCAGATGCATAAACAGTTGATGGATATGATAGAAAAGAAGGAAAAGGAAAGAATGGTGAGAGAAGAAGCTTGGAAGCAGAAGGAGATGGAAAGAATAAAAAAGGATGAGGAGGCCAGAGCCCAAGAAAAATCCCATAATTTAGCCCTCATTTCGTTAATTCAGAATCTATTGGGTCATGAAATTCAAATCCCCCAACCTGCAGTAAGCAGGATGAGAGAAGATGACGAAGGTGAGGCAAGCATCGAAAAAGATTTCAGGAGTGATCTAAGTAACAACAGATGGCCAGAGGCTGAAGTACGAGCACTCATAACTCTAAGAACTTCGTTAGAACATAAGTTTTGTCTTATGGGATCCAAAGTTTCTATATGGGAGGAGATATCTAAAGCGATGAATAATATGGGTTACAACCGTTCTGCAAAGAAGTGTAAGGAGAAATGGGAAAACATCAATAAGTACTATAAAAGGACAATGGAGAGTGGGAAGAAGCGACGTCTAAATAATAAAGCTTGCCCATACTTTGATGAGTTGGACATTCTGTACAGAAATCGGCTCTTGAATATTGGGAATGCCTTTACCAACATCAAACAATGA 1167 0.467 MDFFTGDDFPCHEAPFLETSDLLYAQSTAPIHPLEIVAHRQNPPPQKLRPIRCKDRSSPGGKNLENGRLAVASPDVDYLTSQLCAVPGESIQNLECLGQQVEPREALRKEDCGYVAGIACLPMGNPVGPGSGRVPISEACQLEQESGSSWDDDDNSSGSVKAPGSGKRRKRTMRRLEIFLESLVMKVMEKQEQMHKQLMDMIEKKEKERMVREEAWKQKEMERIKKDEEARAQEKSHNLALISLIQNLLGHEIQIPQPAVSRMREDDEGEASIEKDFRSDLSNNRWPEAEVRALITLRTSLEHKFCLMGSKVSIWEEISKAMNNMGYNRSAKKCKEKWENINKYYKRTMESGKKRRLNNKACPYFDELDILYRNRLLNIGNAFTNIKQ 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1526 388 MobiDBLite consensus disorder prediction 142 162 - -
Glsi03g1526 388 CDD GT1 284 348 - -
Glsi03g1526 388 Pfam Myb/SANT-like DNA-binding domain 284 369 IPR044822 -
Glsi03g1526 388 Coils Coil 188 208 - -
Glsi03g1526 388 SUPERFAMILY Homeodomain-like 282 355 IPR009057 -
Glsi03g1526 388 Gene3D - 286 347 - -
Glsi03g1526 388 MobiDBLite consensus disorder prediction 36 67 - -
Glsi03g1526 388 SMART sant 282 344 IPR001005 -
Glsi03g1526 388 MobiDBLite consensus disorder prediction 142 169 - -
Glsi03g1526 388 ProSiteProfiles Myb-like domain profile. 278 342 IPR001005 -
Glsi03g1526 388 FunFam Trihelix transcription factor GT-2 286 347 - -
Glsi03g1526 388 PANTHER FI21293P1 136 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1526 Glsi-ChrGlsi03 77840707 77843028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1526 165 374 Trihelix Transcription Factor Family AT5G47660 46.018 9.22e-52 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Glsi03g1526 Myb_DNA-bind_4 1.8e-21 CL0123