Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1485 ATGAAACGCCCAATTGATGACATCGCTGTGTCCCTAGTTTCTTCGGCTTCTTCGTCCGCCGCCACTTCCGCCGTCGCCTCCTCGAAACCAGTGTTCTTAACCAAAGCTCAACGCGAACAATTAGCCCTTCAACGCCGCCAAGAAGAAATTGCCGAACAAAGACGCCGCCAGGAACAGCTGCTTTCCCGTAATCGTTCATCTGATCCAACCTCCGATTCTAAACCCTCCGACTCTGACCGCCGCGACCGCGACAGAGACCGAGACCGTGATCGCGACCGGGACCGGGACAGAGACCGCGATAGAGATAGGGATAGGGATAGGGACAGGGAGCGAGAGCGGGATCGTGAGCGTGAGCGAGATAGGGCCCGCGATCGGGACCGGGAAGTAGAACGACGGAACCGAGAGAGGGAGCGTGAAGAGGAAGCTAGGGCTCGTGAGCGTGCTCGGATTGAGAAATTAGCGGAGCGGGAGCGTGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTATCTTGGTTCCAAGAAGCCCAAGAAGCGGGTTATTAAACCTAGTGAGAAGTTCCGATTTTCCTTCGACTGGGAGAACACTGAGGATACTTCTCGCGACATGAACGCTCTCTACCAGAACCCTCACGAGGCGCAGCTGCTCTTTGGGCGGGGTTTTCGTGCTGGAATGGACCGCCGTGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGCGTGAAGAGATCCGGAAGAAGGAGGGTTTGGAGGAGAAGCCAGAAGAGGCTGATGCGCAACGACGAAAGGAGGCTGCTGCTGACCTCTACGACACCTTTGACATGAGAGTGGACCGCCATTGGAGCGAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGACTTTAACATCTCTTACAAGGGTTCCAGAATTCCTCGCCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTGCTGAACTACTGAAGGCGGTAGAGAAGGCTGGGTACAAGACTCCTTCTCCCATTCAGATGGCTGCCATTCCGCTTGGCCTTCAGCAACGTGATGTCATTGGCATTGCAGAGACAGGTTCAGGGAAGACTGCTGCTTTTGTTCTACCCATGTTGAGTTATATCACGAGGCTTCCTCCCATGAGTGAAGAGAATGAGGCCGAGGGTCCCTATGCCGTTGTTATGGCACCTACACGTGAGCTTGCGCAGCAGATTGAGGATGAGACCGTGAAGTTTGCTCAATATCTGGGCATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTAATTGCCACTCCTGGTCGTTTAATTGACTGCCTGGAGCGACGATATGCTGTTCTAAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTAATGGGTGTTTTGGATGCAATGCCTTCCAGCAATCTGAAACCGGAAAATGAAGATGAAGAGCTTGATGAGAAGAGGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCACCGGCTGTGGAGCGGCTTGCTAGAAAATATCTCAGGAACCCGGTTGTGGTAACCATAGGCACTGCAGGAAAGACAACTGACTTGATCAGCCAGCACGTGAACATGATGAAGGAATCTGAGAAATTTTATAAACTTCAAAGGTTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAACACCAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGATAGGGATGGCTATCGTGTTACTACTTTGCACGGTGGGAAGTCACAGGAGCAGAGGGAGATCAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCCTTGTTGCCACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGATATGCCTGGGAATATTGAAATGTACACACATCGTATTGGGCGTACTGGTCGTGCTGGAAAGACTGGTGTGGCAACGACATTCCTGACTCTTCAGGATTCTGATGTTTTTTATGACCTCAAACAGATGCTTTTACAGAGTAATAGTCCTGTTCCTCCTGAATTGGCAAGACATGAGGCTTCGAAATTCAAGCCAGGAAGTATACCTGATAGACCGCCTAGGCGAAATGATACTGTGTTTGCACATTAG 2208 0.4941 MKRPIDDIAVSLVSSASSSAATSAVASSKPVFLTKAQREQLALQRRQEEIAEQRRRQEQLLSRNRSSDPTSDSKPSDSDRRDRDRDRDRDRDRDRDRDRDRDRDRDRDRERERDRERERDRARDRDREVERRNREREREEEARARERARIEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREEIRKKEGLEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSRIPRPMRSWVESKLSAELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQHVNMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDRDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLLQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1485 735 MobiDBLite consensus disorder prediction 44 62 - -
Glsi03g1485 735 Pfam DEAD/DEAH box helicase 340 530 IPR011545 GO:0003676|GO:0005524
Glsi03g1485 735 MobiDBLite consensus disorder prediction 44 146 - -
Glsi03g1485 735 SMART ultradead3 334 556 IPR014001 -
Glsi03g1485 735 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 315 343 IPR014014 GO:0003724
Glsi03g1485 735 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 470 478 IPR000629 -
Glsi03g1485 735 MobiDBLite consensus disorder prediction 710 735 - -
Glsi03g1485 735 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 250 712 - -
Glsi03g1485 735 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 346 541 IPR014001 -
Glsi03g1485 735 Coils Coil 33 63 - -
Glsi03g1485 735 MobiDBLite consensus disorder prediction 13 32 - -
Glsi03g1485 735 Gene3D - 276 545 IPR027417 -
Glsi03g1485 735 FunFam probable ATP-dependent RNA helicase DDX23 276 545 - -
Glsi03g1485 735 MobiDBLite consensus disorder prediction 70 146 - -
Glsi03g1485 735 Coils Coil 119 163 - -
Glsi03g1485 735 CDD DEADc_DDX23 326 542 - -
Glsi03g1485 735 Pfam Helicase conserved C-terminal domain 567 673 IPR001650 -
Glsi03g1485 735 MobiDBLite consensus disorder prediction 702 735 - -
Glsi03g1485 735 FunFam probable ATP-dependent RNA helicase DDX23 546 734 - -
Glsi03g1485 735 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 568 712 IPR001650 -
Glsi03g1485 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 694 IPR027417 -
Glsi03g1485 735 SMART helicmild6 592 673 IPR001650 -
Glsi03g1485 735 Gene3D - 546 733 IPR027417 -
Glsi03g1485 735 Coils Coil 227 253 - -
Glsi03g1485 735 MobiDBLite consensus disorder prediction 232 259 - -
Glsi03g1485 735 CDD SF2_C_DEAD 553 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1485 Glsi-ChrGlsi03 77285896 77288103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1485 321 694 Eukaryotic Initiation Factors Gene Family AT1G72730 34.400 1.19e-61 211