Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1446 ATGGACCCTCTCAATGGAGGCAACAGTGTCACCAGTAACCCTAATCTCAGCTCAAAGCAACGTTTACGGTGGACACATGAGCTGCATGAACGTTTTGTTGATGCTGTGGCCCAACTTGGTGGGCCAGATCGTGCCACGCCTAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACAATATATCATGTCAAAAGCCATTTACAGAAATATCGACTTGCAAAATACCTCCCTGACTCCTCATCTGATGGGAAAAAAGCCGAAAAGAAAGAAACAGGGGACACGCTTTCCAATCTAGACAATTCATCTGGGATGCAAATTACTGAAGCACTAAAGCTACAAATGGAGGTGCAGAAGCGACTACATGAGCAATTAGAGGTGCAGAAACAGCTACAATTACGGATAGAAGCTCAGGGTAAGTACTTGAAGAAGATAATTGAAGAGCAACAGCGGCTCGGTGGGGTTCTGTCAGAAGCACCTGGCTCTGGGGTTGATGCCCAAGTATCAGGTGATGTGTGCGAAGAACCTGAAAATAAGACTGACCCAGCAACCCCTGAGTGCCCCCTTCAAGAAAAAGCTTCCAAAGAGCGTGCTCCAGCAAAGAGTCTATCTGTTGAGGAATCTTTTTCATCTTACCATGAACCATTGACACCTGATTCTGGTTGCAATGTTGGTTCCCCTACCGAAAGCCCTAGAGGGGAGAGATCAGCTAAGAAGCAGCGGGTGACCACCGAAGGTGCATATTCTAAACCAGAAATGGTGCTTCCGCATCAGATACTGGAGTCGAGCATGTCATCATCATACCAGCCATCAAATACTGTTTTCCTCTCCCGAGAGCAGTTTGATCCTTCATTGGGTATATCTACAAGAAGTGAGGAAGATCTGGAAAAGGTTGGTGGCTGA 903 0.4662 MDPLNGGNSVTSNPNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKAEKKETGDTLSNLDNSSGMQITEALKLQMEVQKRLHEQLEVQKQLQLRIEAQGKYLKKIIEEQQRLGGVLSEAPGSGVDAQVSGDVCEEPENKTDPATPECPLQEKASKERAPAKSLSVEESFSSYHEPLTPDSGCNVGSPTESPRGERSAKKQRVTTEGAYSKPEMVLPHQILESSMSSSYQPSNTVFLSREQFDPSLGISTRSEEDLEKVGG 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1446 300 Gene3D - 18 77 - -
Glsi03g1446 300 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Glsi03g1446 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Glsi03g1446 300 MobiDBLite consensus disorder prediction 1 20 - -
Glsi03g1446 300 MobiDBLite consensus disorder prediction 280 300 - -
Glsi03g1446 300 MobiDBLite consensus disorder prediction 156 252 - -
Glsi03g1446 300 Coils Coil 108 128 - -
Glsi03g1446 300 MobiDBLite consensus disorder prediction 79 101 - -
Glsi03g1446 300 FunFam Myb family transcription factor 18 76 - -
Glsi03g1446 300 MobiDBLite consensus disorder prediction 79 95 - -
Glsi03g1446 300 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Glsi03g1446 300 MobiDBLite consensus disorder prediction 204 230 - -
Glsi03g1446 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 292 IPR044848 GO:0003700
Glsi03g1446 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
Glsi03g1446 300 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1446 Glsi-ChrGlsi03 76958771 76961397 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1446 54 300 G2-like Transcription Factor Family AT2G01060 64.683 6.20e-98 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi03g1446 Myb_DNA-binding 1.9e-08 CL0123