Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1433 ATGAGCCTCAGCCATGGCCATAGCCATGATGACACCACCTCCACTACCACCACCACCACCAAGCTTGATGACGATCATCACGAACACGATATGGTCATGCCCGGATTCCGATTCCACCCCACCGAGGAAGAACTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGCTTCAATGTTGAGCTCATTACTTTCCTTGATCTTTATCGCTTTGACCCTTGGGAACTTCCTGCCATGGCAGCAATTGGAGAGAAGGAATGGTACTTTTATGTGCCTAGAGATAGGAAGTATCGAAACGGCGATCGTCCCAACCGTGTCACTACCTCTGGGTATTGGAAGGCAACGGGAGCTGATAGAATGATCAGAACGGAGAATTTTAGGTCAATTGGGCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATCAGAACCAGTTGGATTATGAACGAGTATCGCTTGCCTCATCACGAAACCGAACGATACCAAAAGACTGAGATATCGCTTTGTCGAGTCTATAAGCGAGCTGGTGTAGAGGATCATCCCTCTCTTCCTCGTTGTCTCCAAACCAGACCATCTTCATCAAGAGCTTCACAAGTCTCAGACAAGAACATTAAACACAGCGAAATAATGTTTCATCAAAACATGGGATTTGTGGGACAAACAGTAGTACAGCAAATTATGAATAATGATCATCAAACTGATCAAGGAACCAGCACTACTTCAGGTTCATCAGATCATGTTGTTCATGACGTCACCACAGCTCTTGGGCTTTCCAGGCCCAATAACAACAACGCTTATCTACCAATAATGGAGGACGAAGAAGGGTTAATGCTAAAGCAAGCCCAAGTTTTCGTGCCTCCGTCTCTTGGCTTCTTCCCTGCTGGTTCTTCTTCATCTTCAAGCTCTGCATTAATGGTGGATGATCTGAATAGGCTAGTGACTTATCAGCAACAATACTACAATAATATCAATGTTCAAAGCCACCAGTTCTCTAATTCGCAACTGCAACCTCCACAATTACCAATGGCTCTCAATTCTTCACTACCTGCAAATTCTTCGCTTCCAATTACAACTACTACTACCTTTTCTGACAGACTTTGGGAGTGGAATATGATTCCTGAGCCAAACCGAGAGTACAGCAACATGTCCTTCAAGTAA 1173 0.4501 MSLSHGHSHDDTTSTTTTTTKLDDDHHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRFDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPHHETERYQKTEISLCRVYKRAGVEDHPSLPRCLQTRPSSSRASQVSDKNIKHSEIMFHQNMGFVGQTVVQQIMNNDHQTDQGTSTTSGSSDHVVHDVTTALGLSRPNNNNAYLPIMEDEEGLMLKQAQVFVPPSLGFFPAGSSSSSSSALMVDDLNRLVTYQQQYYNNINVQSHQFSNSQLQPPQLPMALNSSLPANSSLPITTTTTFSDRLWEWNMIPEPNREYSNMSFK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1433 390 MobiDBLite consensus disorder prediction 1 26 - -
Glsi03g1433 390 FunFam NAC domain-containing protein 35 41 182 - -
Glsi03g1433 390 ProSiteProfiles NAC domain profile. 32 179 IPR003441 GO:0003677|GO:0006355
Glsi03g1433 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 29 266 - -
Glsi03g1433 390 Gene3D NAC domain 41 182 IPR036093 GO:0003677|GO:0006355
Glsi03g1433 390 SUPERFAMILY NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Glsi03g1433 390 MobiDBLite consensus disorder prediction 1 19 - -
Glsi03g1433 390 Pfam No apical meristem (NAM) protein 34 158 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1433 Glsi-ChrGlsi03 76820220 76822069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1433 31 390 NAC Transcription Factor Family AT2G02450 51.928 6.63e-117 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi03g1433 NAM 2e-34 No_clan