Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1430 ATGGAAAGCATACCGCACCCAATACCCAGAACAGTGGAGGAGGTTTTCAGCGACTTTAAGGGAAGACGAGCTGGATTGATTAAGGCTCTCACTACTGATGTTGAAAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTATATGGATATCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAAGAAGTTCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCTAGGGATGGGATGCAAGAGAAGGATTGGTTGTCACTAGTTGCTGTTCACAGTGACTCATGGCTGCTGGCTGTGTCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTCCCAACCATATTTGAAGTTGTGACAGGAAGTGCGAAGCAATCAAAGGATCACTCAATTGCTCACAACAATGGTAGCAAAAGCAAATCAAGTGGGAAGGTGTCCTACCAATCTGACTCTCAGGCCAAGGGAGTGAAGATGTCTCCACCACCCAAAGAAGAGGATGAGAGTGGAGAAGAAGATGAAGAAGACGACGAACAAGGGGCAACATGTGGGGCATGTGGTGATAACTATGGCACTGACGAGTTCTGGATCTGTTGTGATATATGCGAGCGATGGTTCCATGGCAAATGTGTGAAAATCACTCCTGCTAAGGCAGAGCACATCAAGCAATACAAGTGCCCAAGTTGCAGTAACAAGAGGGCTAGAACTTAG 762 0.4514 MESIPHPIPRTVEEVFSDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGYPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVSFYFGARFGFGKNERKRLFQMINDLPTIFEVVTGSAKQSKDHSIAHNNGSKSKSSGKVSYQSDSQAKGVKMSPPPKEEDESGEEDEEDDEQGATCGACGDNYGTDEFWICCDICERWFHGKCVKITPAKAEHIKQYKCPSCSNKRART 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1430 253 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Glsi03g1430 253 MobiDBLite consensus disorder prediction 145 173 - -
Glsi03g1430 253 CDD PHD_AL_plant 200 249 IPR044104 -
Glsi03g1430 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 248 IPR013083 -
Glsi03g1430 253 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Glsi03g1430 253 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Glsi03g1430 253 MobiDBLite consensus disorder prediction 183 198 - -
Glsi03g1430 253 MobiDBLite consensus disorder prediction 145 198 - -
Glsi03g1430 253 PANTHER CPG BINDING PROTEIN 9 252 IPR045104 GO:0006355|GO:0042393
Glsi03g1430 253 FunFam PHD finger alfin-like protein 192 248 - -
Glsi03g1430 253 SUPERFAMILY FYVE/PHD zinc finger 188 250 IPR011011 -
Glsi03g1430 253 SMART PHD_3 199 247 IPR001965 -
Glsi03g1430 253 Pfam PHD-finger 200 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1430 Glsi-ChrGlsi03 76769828 76775506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1430 1 250 Alfin-like Transcription Factor Family AT1G14510 81.200 1.36e-132 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi03g1430 Alfin 1e-69 No_clan