Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1429 ATGTCAGAAATGCGGGTTTCTGATCCAAGCAAGCTCCACCTGAAGAAGGAGCTCACTCAAATTCGTAAAGCTGCTCGTCGTGTATTGAGGGATCCTGGTACAACATCTTCCTGGAAGTCACCAATTAGTTCCTCAAGATCTTTGGCAGCTGCTTCTGCTTCTGCATGGAAGAGCAACTTGGAGAATGAAAGTAGAAGACTCAATGGCAATTCTCAGCTTGCTTCTCAGTTGTCTCTGCCTAGTGGGAATCATAATAACAGTATCAACAATGGAAAAGAGGAGAGGGTGTGCTTGTACAATTGGAAGAATCACAAATCATCCAGCGAGAAGAGTGGCGTCGCCAAAAACAATGGCGAAGAAGAAGATGAAAATGATGATAGATCTTCATCCCTTCTGGGAAGTTTCGAGGATAGTTTGAGTGATGCTCGAAATAATGGCGATTCGAAGAGTGATAGTTACTTCGGGGGTGGGACTAGTTCTTCTATTTTCCGGTGTAGAGATGCAAATCTTGTTTCGTTGGCAACTTCATCAGCCAGAAGTACAATGGCAATTAAGAAAAAGAGTAAGAAAACCAATACCCATTTGAATATTGTGAGAAAATATCAACAACGAGAAAACAATCTGGGTAGAAATCTAGTAAATTCCAAAACATTACTAGAGGGGCATCCTTCGATGGTTTATAGCTGGGATGGCTCAATTGAACAGTCTGATGATACTGAAGATTACTGTAATTCTGAGGATTTCAGGGGAATTTCAGGGGCATCTCCTTTGCTATTGAAACTCAAGCATAAGAATTGGTCTCGTTCTTCCTCTAAGTTTTTGAGAAGTAGCCGAAAAGAGGACTCTTCTTATTCTTATAGTACTCCTGCATTGTCAACCAGTTCTTACAATAGGTACGGTCACTATAATCCAAGTACTGTTGGATCCTGGGATGGCACGACAACCTCAATGAATGATGGTGACGATGAGGTAGATGATCATTTGGATATGCCTGGCCGAAAGGGATGTGGGATTCCTTGCTATTGGTCAAAGAGGACTCCAAAGCATGGAGGGATGTGTGGGAGTTTTTATTCTCCTTCACTTTCGGACACTTTAAGGAGGAAAGGAAGTAGCATATTCTGTGGAAGTCAAACTATCCATCCGAGACACCGGACTTGGAAATCCTCATCAAGCTCTAACAAGTGGAGAATTTCTTCAAGGAGTGCTCAAGGTGTTCTTCCATTGCTCACTAACAATGGCAATGTTAGAGGAGGGTCATCTATAGGAACTGGAAGGAGTGATGATGAACTTTCTATAAACTTTGGGGAACTTTATCTAGAGGGTTTGAGCAAGTTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAAGGATTGGAGATTGTGCCTCTAGATGGGGAAGGGGACGAGGAAAGCACACCAGAAAATATTAGGAGTCTCAGTCAAAAGTATAGGCCCATGTCCTTCGGTGAATTGATTGGCCAGAATATTGTGGTTCAGTCACTTACGAATGCTGTTTCAAGGGATCGAATTGCTCCCCTTTATCTTTTCCAAGGTCCCCGTGGTACTGGTAAAACATCAACAGCCAGAATTTTTGCTGCTGCCTTGAATTGTATGGCTCCTGATGCAAGTAAGCCTTGTGGCTACTGCAGAGAATGCACTGATTTCATTTCTTGCAAGAGCAGGGATCTTTTAGAAGTTGATGGAACAAATAAGAAAGGGATTGATAGAGTTAGATATCTATTGAAAAGACTATCAGTAAAGTCATCATCAGCCTCCTCACAGTACACGGTCTTTGTGATTGATGAGTGTCACTTGCTACCCTCTAAGACATGGCTGGCATTACTCAAGTTTCTGGAAGACCCACCTCACCGAGTTGTGTTCATATTTATAACAACTGACATTGACAACGTGCCTCGAACTATACAATCTCGATGCCAGAAGTACCTTTTTAACAAAATTAAAGACGGCGATGTTGTGGCCAGATTGAAGAAAATATCTGCTGAAGAGAACCTGGATGTTGAAACAGATGCTCTGGAGCTTATTGCTATGAATGCAGATGGTTCACTTCGTGATGCAGAAACTATGTTAGAACAGCTGAGTTTGCTGGGAAAAAGAATTACTACTTCACTTGTCAATGAACTTGTGGGTGTTGTTTCAGAAGAAAAATTACTGGAACTTTTGGAGTTAGCAATGTCATCAGACACTGCAGAAACAGTGAAAGGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAAATGGCTAGCCTTATTATGGACATTATTGCCGGATCATATACTGTCATTGATGCCAAACCTGGTGATTTGGATTTTGGTGGACGAAATTTGAATGAATCAGAGTTGGAGAGGTTAAAGCATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCTAGTGAACGCTCAACATGGTTCACAGCAACTCTGTTACAACTTGGTTTAATGCCCTCACCGGATCTTACCCAGTCAAGCAGCAGCAGGAGGCAAAGCTGCAAGAGTTCCAGAGATGATCCATCAAGCGATTCAAGAGAAATTACTGCTTACAAGAATAAGTCAGATGTTCAATATATGCCTCGAAAGTCAACACCCCCAGCATCTCAGCAAAAAAATGTAAATATCAATTCCAGACATGAACAGGAGATATCATCGAAGTTAGATGGTTTCAACTTGAGTTCAAAGCCATCAAATAGCCTGGTCATAGAGGATGGTTCCACGCCTGTCTCATCTGATGATCTCATTGTTGGGAATATGATGTTAAGATGCATAAATTCAGGAAAGTTATGTGATATTTGGGCATGTTGTATAGAGAGGTGTCACTCTAAGACACTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTATCCATTTGTGAAGTTGAAGGTGTTCTTGTTGCGTATATTGCATTTGGGGATGGAGATATTAAACAAAGGGCTGAAAGGTTTTTGAGCAGTATTACAAATTCCATGGAAATGGTACTTAGACAAAATGTCGAGATTAGAATTATCCATTTGCTGGATAGCGACGCCGAAAAACTACCAGGTCTAAATCAGATAGAGGCAACAATTGCAAGTGAGAAGGAAAAAAGAAGAGGCTATGCAAATGGAACAGATGGAAACTTCCTAGCTACCACTGATACATCAGATTTTATGGCTGAGGGAAATGGTGTGAGAGAGAGTGGACAAGATATTCCAATGCAGAGAATCGAATCTATTATTTGTGAGCAGAGGCTGGAAACTGCCTGGCTACAGGCCGTAGAAAAAGGTTCCACTGGATCATTGAGTTGTTTGAGACCTGAAAAGAATCAGGTCCTGCCTCAGGATGGTATCTACTGTAAAGACCAAATGAAGTCCTTAGATTCAACAAGGTTGAACTCTCAGCATTGGGAAGATGACCTTAATCTTGAAGTCAAAGTCTTGAATGGTAAAAATGGAAGGGTTCTACAAAAGGGTCAGATTGGTAGAAGGGTAGTAGATCGATGTCCCATGTCCCCGAGTTTATTGCATGATAGAAGTTTAGCAACAAGTTCTAGCAAAGACAATCTGGGATATGAATCAGGCACAGGAGTTGGAGGTTGCAGTAAATTTTTATGTTGGAATAACTCCAAGCGTAGAACGGTAAAGGTAAAAGGTACCCCAGTTGGAGCACATAAAGTTGGACATTTTTCATTATTTGGTGAGTGTGCTCATCTGAGAAAGGACCCTTCAGTCCAAACACAAAAAACAAAAAAAAGGCAGAAAGGACTCTTTGGAGAATACAACGACCGGAGCGGAAGAGAGATAGAAGCAGTGAAGCCAAACAGCGAGAATGGCGAAGGGGCACACCGGCGAGTTTTTCAGGAGGAGGGACGAGTGGAGGAAGCACCCGATGCTGACGAATTAGCTCCCACATGCTGCCCCTGGACTCGGCATCGCCCTAGTGGCCTTCGGCATCTACCTCGTCGGCGAACAAGTCTACAATAG 4011 0.4241 MSEMRVSDPSKLHLKKELTQIRKAARRVLRDPGTTSSWKSPISSSRSLAAASASAWKSNLENESRRLNGNSQLASQLSLPSGNHNNSINNGKEERVCLYNWKNHKSSSEKSGVAKNNGEEEDENDDRSSSLLGSFEDSLSDARNNGDSKSDSYFGGGTSSSIFRCRDANLVSLATSSARSTMAIKKKSKKTNTHLNIVRKYQQRENNLGRNLVNSKTLLEGHPSMVYSWDGSIEQSDDTEDYCNSEDFRGISGASPLLLKLKHKNWSRSSSKFLRSSRKEDSSYSYSTPALSTSSYNRYGHYNPSTVGSWDGTTTSMNDGDDEVDDHLDMPGRKGCGIPCYWSKRTPKHGGMCGSFYSPSLSDTLRRKGSSIFCGSQTIHPRHRTWKSSSSSNKWRISSRSAQGVLPLLTNNGNVRGGSSIGTGRSDDELSINFGELYLEGLSKLDGRRWSSSCRSQEGLEIVPLDGEGDEESTPENIRSLSQKYRPMSFGELIGQNIVVQSLTNAVSRDRIAPLYLFQGPRGTGKTSTARIFAAALNCMAPDASKPCGYCRECTDFISCKSRDLLEVDGTNKKGIDRVRYLLKRLSVKSSSASSQYTVFVIDECHLLPSKTWLALLKFLEDPPHRVVFIFITTDIDNVPRTIQSRCQKYLFNKIKDGDVVARLKKISAEENLDVETDALELIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSEEKLLELLELAMSSDTAETVKGARELMDSGVDPMVLMSQMASLIMDIIAGSYTVIDAKPGDLDFGGRNLNESELERLKHALKLLSEAEKQLRTSSERSTWFTATLLQLGLMPSPDLTQSSSSRRQSCKSSRDDPSSDSREITAYKNKSDVQYMPRKSTPPASQQKNVNINSRHEQEISSKLDGFNLSSKPSNSLVIEDGSTPVSSDDLIVGNMMLRCINSGKLCDIWACCIERCHSKTLRQLLHNHGKLVSICEVEGVLVAYIAFGDGDIKQRAERFLSSITNSMEMVLRQNVEIRIIHLLDSDAEKLPGLNQIEATIASEKEKRRGYANGTDGNFLATTDTSDFMAEGNGVRESGQDIPMQRIESIICEQRLETAWLQAVEKGSTGSLSCLRPEKNQVLPQDGIYCKDQMKSLDSTRLNSQHWEDDLNLEVKVLNGKNGRVLQKGQIGRRVVDRCPMSPSLLHDRSLATSSSKDNLGYESGTGVGGCSKFLCWNNSKRRTVKVKGTPVGAHKVGHFSLFGECAHLRKDPSVQTQKTKKRQKGLFGEYNDRSGREIEAVKPNSENGEGAHRRVFQEEGRVEEAPDADELAPTCCPWTRHRPSGLRHLPRRRTSLQ 1336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1429 1336 NCBIfam DNA polymerase III subunit gamma/tau 479 829 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Glsi03g1429 1336 CDD HLD_clamp_pol_III_gamma_tau 655 718 IPR045085 -
Glsi03g1429 1336 Gene3D - 658 718 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 131 153 - -
Glsi03g1429 1336 Pfam DNA polymerase III subunits gamma and tau domain III 709 775 IPR022754 GO:0003887
Glsi03g1429 1336 FunFam DNA polymerase III subunit gamma/tau 476 654 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 114 130 - -
Glsi03g1429 1336 Coils Coil 791 818 - -
Glsi03g1429 1336 SMART AAA_5 512 662 IPR003593 GO:0016887
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 1254 1336 - -
Glsi03g1429 1336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 702 IPR027417 -
Glsi03g1429 1336 CDD AAA 494 652 - -
Glsi03g1429 1336 Gene3D - 472 653 IPR027417 -
Glsi03g1429 1336 Pfam DNA polymerase III, delta subunit 495 655 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 25 50 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 107 153 - -
Glsi03g1429 1336 SUPERFAMILY post-AAA+ oligomerization domain-like 726 830 IPR008921 GO:0003677|GO:0006260
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 1254 1307 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 833 889 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 847 865 - -
Glsi03g1429 1336 FunFam DNA polymerase III subunit gamma/tau 656 718 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 872 889 - -
Glsi03g1429 1336 MobiDBLite consensus disorder prediction 33 50 - -
Glsi03g1429 1336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 481 906 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1429 Glsi-ChrGlsi03 76756295 76763759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1429 483 770 Core DNA Replication Machinery Family AT1G21690 25.926 6.00e-16 79.0