Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1426 ATGGAACTTTCTAGTCAAGAAGGAGAAATCCCAATCCCATATGGTGGGGAACATGGTAATGGCCATGGGCACATGGTTCATCATGACCCTCCACACCATAACCCTTCAAATGGCTCCTCTGCGCAAGCAGCCCTTCAGGAGGAACATGGACCCTACAAGAAAGTGGTAAGGTACAGAGAATGCCTTAAAAATCATGCAGCTACTATGGGAGGGAATGCCACTGATGGGTGTGGAGAGTTCATGCCTAGTGGAGAAGAAGGGACCATAGAAGCTTTGAACTGTTCTGCCTGCCACTGTCACAGAAACTTCCACAGAAAGGAAGTGGAAGGTGAGCCCTCTTCATGTGACTACCACACCCCCTCACATTTCAACAGGTTGGGGAGGAAGTTCCTTCTAGGCCACCATCACAAGAATATCCTACCTCCTGAGGCTCTGGGGTACCCTACAGGTAACATTCTGCCTTCAAGGGCTGTACCACCTCACCAGATGATAATGCCCTACAACATAGGGTCCCTTTCCCTTCCTTCAGAATCTGATGAACAAGAAGAGGGTGGTGGAGGAGGAGGAATAGTGGCTCCCAGGCCACAACAGCTAGTGAAGAAAAGGTTCAGAACAAAGTTCACTCAGGAGCAGAAGGAGAAAATGCTGAACTTTGCAGAAAAAGTTGGGTGGAAAATTCAGAAGCAAGAAGAGCCTCTGGTGGGTGCAGTTTACTTTACTTCTCTTGAGCATTTTATTGAACACTTGGAATGCAAGACTCAGTCTGAGGTACTATATGCATAG 783 0.4777 MELSSQEGEIPIPYGGEHGNGHGHMVHHDPPHHNPSNGSSAQAALQEEHGPYKKVVRYRECLKNHAATMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDYHTPSHFNRLGRKFLLGHHHKNILPPEALGYPTGNILPSRAVPPHQMIMPYNIGSLSLPSESDEQEEGGGGGGIVAPRPQQLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEEPLVGAVYFTSLEHFIEHLECKTQSEVLYA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1426 260 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 32 235 - -
Glsi03g1426 260 MobiDBLite consensus disorder prediction 173 195 - -
Glsi03g1426 260 Pfam ZF-HD protein dimerisation region 56 108 IPR006456 -
Glsi03g1426 260 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 57 108 IPR006456 -
Glsi03g1426 260 SUPERFAMILY Homeodomain-like 196 232 IPR009057 -
Glsi03g1426 260 Gene3D - 192 254 - -
Glsi03g1426 260 MobiDBLite consensus disorder prediction 1 44 - -
Glsi03g1426 260 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 58 107 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1426 Glsi-ChrGlsi03 76691396 76692504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1426 55 234 ZF-HD Transcription Factor Family AT2G02540 51.031 4.87e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi03g1426 ZF-HD_dimer 1e-28 No_clan