Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1419 ATGGCGCCGGAGGATCTTCGTGAAAGACGAGCCGGCGATCCGCCCCAACCGGATGGCTCTCAGGCGGCCTTGCATCGCCGCGTGGCCCCTTCTGTGGCGAAGGAGTTCTCGCATTTTCTGGAAAGGGGTATGAGCCCAATTGGTGTTACTCTGTTCACTCGATCCAGAACTCCTAGATTTTTCTGCTGTTTTGAAGATTATTTGTGTGGTTCTTTTATGGCTTCAAATCCGACATCTGGTGGAAACCATGCAGGGGTAACCAACGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCCCTTGTCACTCTTCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAACAGCTTGAGGCATCTATGCATCAGGGATCAGAGCAGCAAATGCCCTCCTTTAATCTGCCTTCTAAGATTTTGTGCAAAGTGGTGAACGTTCATCTTCGGGCTGAATCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCAGAAGTTCATCAAGTTGAGGTGACTAGCCCAGATGATCCTCTGCCAGAACCTCCAAGGTGCACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGCACCCATGGAGGATTTTCTGTTCTTCGAAGACATGCAGATGAATGTTTGCCGCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTAGACATATTTTTCGGGGGCAACCTAGGCGCCACTTACTGACTACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCCTAAGAGGTGAAAATGGAGAGCTGCGTGTTGGAGTTAGGAGGCTCATGAGACAACAGAACAACATGCCATCTTCTGTTATTTCTAGTCATAGTATGCATCTTGGAGTTCTGGCCACTGCATCTCATGCTATTAACACTGGAACTCTCTTCTCTGTATTTTACAAGCCCAGAACAAGCCGATCAGAGTTTATTGTGAGTGTCAACAAGTATCTTGAAGCTCGGAGTCATAAGTTTTCTGTTGGGATGAGATTCAAGATGAGATTCGAGGGTGATGAAGTTCCTGAAAGAAGGTTTAGTGGTACAATTGTGGGTGTTGGAGATAATAAATCAGGTGTCTGGGCAAATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCGTCTTCAATCTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTGACTACCACTCCTGCTAATGCCCAACCAACCCAAAGAAATAAAAGGGCACGGCCTCCCTATCTACCTTCGGCAATGTCTGATCATGGTGTGTGGAAATCACCAGTTAAATCTCCACCTTATTCTTATCGTGACCCCCAACATGGACGAGACCTCTATCCATCACCCAAGTTCAATTCTACTGCAACTAACTTTCTTGGTTTTGGGGGGAATAGCTCTGTGGGGCCTGTTTCTAACAATGCACCATATTGGTCTAATATGGTGGAGAACACTACAGAGACTTTTTCACCTATAGCCATTAAAGAATCTAATGAAAGGAGACAAAACACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGCTACTTGAGAATTCTAATGTAGATGAAAGTAGGCCAACAGTTACATTGTCAGGAAGGGTGGGAGATGATAGGTGTGTTCCATCGTTAGATGTCGACTCTGATCAGCATTCTGAACCATCAAATGTTAATCGCTCTGATGTTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCCCCCAGAATCACAAAGCAGGCAAATAAGGAGCTGCACGAAGGTTCACATGCAAGGAATGGCTGTTGGGAGGGCTGTGGATTTGACACAGTTTGATGGATATGAGGATCTGCTTAGGAAATTAGAGGACATGTTTGACATCAAGGGTGAGCTTTATGGATCCAATAAAACATGGCAGGTTGTCTACACTGATAATGAAGACGATATGATGATGGTTGGAGATATTCCGTGGAATGAGTTCTGTGGGGCTGTGAGGAAGATTTTCATCTACACAGCAGAGGAGGTGAAGAAGCTTTCGCCCAAAATGGTACTTTCAATTAGTGAAGAAGCTAAACCAAGCAAGCTGGATTCTGAAGCAGCAGTCAATACTGAGGACCAGGAGCAGTCATCTTTTGTGGGGCCCTGTTGCTAA 2235 0.4537 MAPEDLRERRAGDPPQPDGSQAALHRRVAPSVAKEFSHFLERGMSPIGVTLFTRSRTPRFFCCFEDYLCGSFMASNPTSGGNHAGVTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMHQGSEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPEVHQVEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAINTGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKFSVGMRFKMRFEGDEVPERRFSGTIVGVGDNKSGVWANSEWRSLKVQWDEPSSILRPDRVSPWELEPLVTTTPANAQPTQRNKRARPPYLPSAMSDHGVWKSPVKSPPYSYRDPQHGRDLYPSPKFNSTATNFLGFGGNSSVGPVSNNAPYWSNMVENTTETFSPIAIKESNERRQNTGNGCRLFGIQLLENSNVDESRPTVTLSGRVGDDRCVPSLDVDSDQHSEPSNVNRSDVPSVSCDAEKSCLQSPPESQSRQIRSCTKVHMQGMAVGRAVDLTQFDGYEDLLRKLEDMFDIKGELYGSNKTWQVVYTDNEDDMMMVGDIPWNEFCGAVRKIFIYTAEEVKKLSPKMVLSISEEAKPSKLDSEAAVNTEDQEQSSFVGPCC 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1419 744 MobiDBLite consensus disorder prediction 580 596 - -
Glsi03g1419 744 MobiDBLite consensus disorder prediction 722 744 - -
Glsi03g1419 744 SMART B3_2 196 298 IPR003340 GO:0003677
Glsi03g1419 744 FunFam Auxin response factor 359 431 - -
Glsi03g1419 744 SUPERFAMILY DNA-binding pseudobarrel domain 185 325 IPR015300 -
Glsi03g1419 744 MobiDBLite consensus disorder prediction 555 596 - -
Glsi03g1419 744 CDD B3_DNA 194 296 IPR003340 GO:0003677
Glsi03g1419 744 MobiDBLite consensus disorder prediction 429 473 - -
Glsi03g1419 744 Pfam B3 DNA binding domain 196 296 IPR003340 GO:0003677
Glsi03g1419 744 Gene3D - 359 432 - -
Glsi03g1419 744 FunFam Auxin response factor 194 298 - -
Glsi03g1419 744 SUPERFAMILY CAD & PB1 domains 620 695 - -
Glsi03g1419 744 Gene3D - 613 707 - -
Glsi03g1419 744 Gene3D - 193 298 IPR015300 -
Glsi03g1419 744 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 90 707 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi03g1419 744 Pfam AUX/IAA family 616 708 IPR033389 -
Glsi03g1419 744 ProSiteProfiles PB1 domain profile. 618 711 IPR000270 GO:0005515
Glsi03g1419 744 FunFam Auxin response factor 613 707 - -
Glsi03g1419 744 ProSiteProfiles B3 DNA-binding domain profile. 196 298 IPR003340 GO:0003677
Glsi03g1419 744 Pfam Auxin response factor 322 404 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi03g1419 744 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1419 Glsi-ChrGlsi03 76535120 76548391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1419 73 737 B3 DNA Binding Superfamily AT1G59750 70.404 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi03g1419 AUX_IAA 1e-13 CL0072