Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1408 ATGACAGTACCGGACCAACACTTGTTATGGAAATGGATAGACGATGTTCAAGCGGTTACTGCCAAATATTCGGAAATAAAAATATCTGGAGCTTATCGTTGGATGCATGTGCTTTCTGAAAAGCCACTGAGATATTTGGAAGGAATTATACCAAATGACATACTAGGTATGATTGAAGATGGTCAGAGGTTCATGTTTGAAAATGCAGTAATTGTATCAAATGAATCAGTGACCTCTGCCAGCACAAGCAAAGTGAATGAAGTGCTTGAATTGACGGATATCCATGATGTGATTTCAGAAGTTAGAGATGATTCAGATGACGAGGCATCTTTATCTTCGCCATCCGACGAGGAATGTTTCCCATCCAACGAGTACGAGAATCAGAATACTTTTCTGAATCCTCCTGATCTCTCAATCCAAACAACGCCAGAAGATCAGATCTTGCACGATCCTCTTGAAGCAGGAAGTGGCAGGCAATTTCCAGCTGCTAGGGTAAAAAAGGACTGTAAGATTACCAAAGATGATCAAAACAAGAGGTGGAATTCTTGGGCTTTTGTAGAACGTCAAAGAAGACAACAAATGGCCACTCTTTATGCTTCCCTCAGATCACTTCTTCCTCTTGAATATATAAAGGGAAAGAGATCAATGTCTGATCATTTATATGAGGCAGTGAATTATATCAAACACCTACAGAATAAGGTGGAGAAGTTGAAGACTAAGAAGCACGAGTTACAGGAATTGCAGACCATTCCTCTAACCAATTTGAAAGCATTTGGCCCTCATGATCTTCCAATTATTAGTATTCATCCTTGTAAGGGTGTAGTTAATATTGCATGCAGCTGCAGCTTAAGGACGCATGTTTTTCCACAATCAATGATTCTGAATGTACTGTATAAAGAAGGGCTAAATGTGGTCAGCTCGTGCTTCAGCAAAATGGGTGACATGTTCCTTCACACAATACAATTAGAGGATACAGATATGGCTGAGAAAGACTGCTCTGAATTGCAAAGAAAGCTTACTAGAGCAATATTATTAACAAGTTTTGAGATGGTGCTAATGGCAAAGATTAAATTGTTCCGTGAGGAGGGGAAAATGGGTAATGTCGCATTAAGTCCAGAATGGAATTTTGCCCTGAGATAG 1140 0.3965 MTVPDQHLLWKWIDDVQAVTAKYSEIKISGAYRWMHVLSEKPLRYLEGIIPNDILGMIEDGQRFMFENAVIVSNESVTSASTSKVNEVLELTDIHDVISEVRDDSDDEASLSSPSDEECFPSNEYENQNTFLNPPDLSIQTTPEDQILHDPLEAGSGRQFPAARVKKDCKITKDDQNKRWNSWAFVERQRRQQMATLYASLRSLLPLEYIKGKRSMSDHLYEAVNYIKHLQNKVEKLKTKKHELQELQTIPLTNLKAFGPHDLPIISIHPCKGVVNIACSCSLRTHVFPQSMILNVLYKEGLNVVSSCFSKMGDMFLHTIQLEDTDMAEKDCSELQRKLTRAILLTSFEMVLMAKIKLFREEGKMGNVALSPEWNFALR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1408 379 CDD bHLH_AtORG2_like 186 244 - -
Glsi03g1408 379 MobiDBLite consensus disorder prediction 115 142 - -
Glsi03g1408 379 MobiDBLite consensus disorder prediction 102 142 - -
Glsi03g1408 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 181 250 IPR036638 GO:0046983
Glsi03g1408 379 Gene3D - 169 257 IPR036638 GO:0046983
Glsi03g1408 379 Coils Coil 227 250 - -
Glsi03g1408 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 230 IPR011598 GO:0046983
Glsi03g1408 379 Pfam Helix-loop-helix DNA-binding domain 186 231 IPR011598 GO:0046983
Glsi03g1408 379 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 186 341 - -
Glsi03g1408 379 SMART finulus 184 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1408 Glsi-ChrGlsi03 76410096 76419584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1408 186 347 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 35.294 3.64e-26 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi03g1408 HLH 5.5e-10 No_clan