Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1390 ATGGGTTGTATATGCTCGAAAGAAACTTCTTCAAATGACTACGTTGCGGAGAACCATGTCAACGACAAAAACTCCGAGGCAAATAAACCCTCAAAACATTTGTGTGTTTTCCGGAGGACAGAGAAAGTTGCAAAAGTAGCAATGGAGGCTGATGGTGGTGGGAATGATGCCACTGCACGGTTAATATCTAATCCAAATCTAAATGGAACTGCAGGGTCCACTCCCATTTCGTCAGATGAGGGGGAGAAGAAAGGAAAGCCTGCAAATTTACTGGTTCAGATGGGCTCCAGCGTGGGAAATGGAAGTGAAGAACAAGGAGAACCTAGGATGCCTAGGATGGTTAGCGTAAATGGAGGGGAAAGAGGAGCCCAAATTCTTGCTGGGTGGCCTTCTTGGCTTACTACAGTTGCAGGGGAAGCCATTAGTGGTTGGATACCGCGTAGAGCTGACTCATTCGAGAAGTTGGAGAAGATTGGGCAAGGAACTTACAGCAGTGTATACAGAGCTCGTGATCTTGAAAACAATAAAATTGTGGCACTGAAGAAGGTTCGGTTCGCCAATATGGATCCAGAAAGTGTTCGTTTTATGGCTAGAGAAATTGTGATACTACGAAGGCTTGATCATCCAAATGTCATGAAGCTCGAAGGCATGATAACTTCAAGGGTTTCTGGCAGCCTGTATCTTATTTTTGAATACATGGAGCATGATCTCACGGGGCTTGCGGCAATACCTGGCATCAAGTTTTCTGAAGCACAGATAAAATGTTTTGCGCAACAGCTGCTTCGGGGTCTTGACCATTGTCACAGTCACGGCGTTCTGCACCGTGACATCAAGGGCTCAAATCTTCTCGTTGACAAAAATGGCAACCTAAAAATTGGCGATTTTGGGCTAGCAACTTCGTTTCAGCCATCTCAGGGGCAGCCTTTAACAAGTCGTGTGGTAACCTTGTGGTACCGATCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGTTGCTATTGACCTGTGGAGTGCTGGTTGCATTCTTGCAGAATTGTTCGCTGGGAAGCCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATCTTCAAACTCTGTGGATCACCTTCTGAAAAATACTGGAAGAAGTCAAAGCTACCACATGCCACAATATTCAAACCTCAACAGCCTTACAAACGTGTTGTTGCTGATACATTCAAGGATTTTCCATCATCGGCATTGAACCTTTTGGATGTCCTTCTCGCTATAGAACCTGAGGATAGAGGAACTGCTTCTTCAGCCCTTAAGAGCGAGTTCTTCACAACAAAGCCGCTTCCTTGTGATCCATCAACTTTGCCAAAGTTCCCACCGAGTAAGGAGTTTAATGTCAAGCTTCGAGAAGAGGAATCTAGAAGATCTCCTAGTGACGTCTATAATTTAGATGATGAAGTTTGCTTAGGCTATGCTACCAAAAATGGCTCCGTGCACTACTCGGGACCATTGGTCTCCCTCGGGGGAAATGTGGAAGAAATGCTTAAGCAGCACGAAAGACAAATTCAAAATGCTGTCCGCAAAGCTTGTTTGAATAAGGTATTGTACACAGTTCTAACTAACAAAGGCCTTAGATGCTTCGGGAAGATGGTGGTGAGGCAATCTCCTTGGCATTTCACAACTGCTGGAGATTGA 1674 0.4492 MGCICSKETSSNDYVAENHVNDKNSEANKPSKHLCVFRRTEKVAKVAMEADGGGNDATARLISNPNLNGTAGSTPISSDEGEKKGKPANLLVQMGSSVGNGSEEQGEPRMPRMVSVNGGERGAQILAGWPSWLTTVAGEAISGWIPRRADSFEKLEKIGQGTYSSVYRARDLENNKIVALKKVRFANMDPESVRFMAREIVILRRLDHPNVMKLEGMITSRVSGSLYLIFEYMEHDLTGLAAIPGIKFSEAQIKCFAQQLLRGLDHCHSHGVLHRDIKGSNLLVDKNGNLKIGDFGLATSFQPSQGQPLTSRVVTLWYRSPELLLGATDYGVAIDLWSAGCILAELFAGKPIMPGRTEVEQLHKIFKLCGSPSEKYWKKSKLPHATIFKPQQPYKRVVADTFKDFPSSALNLLDVLLAIEPEDRGTASSALKSEFFTTKPLPCDPSTLPKFPPSKEFNVKLREEESRRSPSDVYNLDDEVCLGYATKNGSVHYSGPLVSLGGNVEEMLKQHERQIQNAVRKACLNKVLYTVLTNKGLRCFGKMVVRQSPWHFTTAGD 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1390 557 FunFam probable serine/threonine-protein kinase At1g54610 139 234 - -
Glsi03g1390 557 FunFam probable serine/threonine-protein kinase At1g54610 235 474 - -
Glsi03g1390 557 Gene3D Transferase(Phosphotransferase) domain 1 240 475 - -
Glsi03g1390 557 ProSiteProfiles Protein kinase domain profile. 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1390 557 Pfam Protein kinase domain 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1390 557 SMART serkin_6 152 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi03g1390 557 MobiDBLite consensus disorder prediction 61 84 - -
Glsi03g1390 557 CDD STKc_CDK9_like 152 436 - -
Glsi03g1390 557 MobiDBLite consensus disorder prediction 61 77 - -
Glsi03g1390 557 SUPERFAMILY Protein kinase-like (PK-like) 145 444 IPR011009 -
Glsi03g1390 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 272 284 IPR008271 GO:0004672|GO:0006468
Glsi03g1390 557 PANTHER CELL DIVISION PROTEIN KINASE 150 442 - -
Glsi03g1390 557 ProSitePatterns Protein kinases ATP-binding region signature. 158 181 IPR017441 GO:0005524
Glsi03g1390 557 Gene3D Phosphorylase Kinase; domain 1 147 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1390 Glsi-ChrGlsi03 75969465 75976129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1390 144 469 Core Cell Cycle Gene Families AT5G10270 51.026 9.28e-117 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi03g1390 Pkinase 2.6e-69 CL0016