Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1359 ATGGAGACTCAGTTCAATCACAATCTATTTGAGAGGCGCCCCATCTTCAAGTCCAAGACTCCTGCCGTCAAATGGGTTAAAGAATGGGTTCCCCAGGATATTGTAGCAACTGGTGGAAATTGCATGCTCTTTAGATGGGTAACAGAGGATACCTTAAAGGCCTTGAAGGATAAGGAAAACGAACCATCAGTGCCTGAGCCAGAACCAGAGCCAACTACTGAAGTACTTTTCCTCTGCAGCTATGAAGGCTGCGGAAAGACTTTCATAGATGCTGGTTCTTTAAGGAAGCATTCTCACATCCATGGAGAGAGGCAATTTGTTTGTCACTATGAGGGATGTGGAAAGAAATTTCTGGATAGTTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGTGAGAGGGACTTCGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACCTGAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATTTGCCCATACCCAGATTGTGGAAAGAGATACGCTCACGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAATGGATCTGTGGATGTGACTGTGGCAAAGTATACACCGCCTTCTGAGAAGCAAACGAAAACTACAAAATCTTCTGGGGGGGCCTATGGTTCTGCATCATCTGATCGCCCTTTTGCATGTCCTTACGAAGGGTGTGAAAAGGCCTATATCCATGAATACAAGCTTAAACTCCATTTGAAGAGAGAGCATCCTGAGCACATGTCTGATGAAAATGCAGAAAATGCTCAGGCTAATGCTGACAATGGAATGGATGAAGCCAGCGACCAAGATGCCTACAGTGGGAAGAGGTCAAATGGTAGAAGTCAGAAGCAAAGTAAGCCTAAACAAAACCTTAAGTTGCCTCCTTCCAAAGTTGCACGGCGCAAAGGATCAACTCCTTCAGCCACTTTGAATGTTATTAAAAAACCTTGGCCAGTGAAAGACGAAACTTATGAGGAAGATAGCGAAGAAACAGAGGACGAGGATCGTGACAACGTCGAAGATGGTTGGAGATATGCACGAAACAACGAAGATGATGATGAAGAAACAGAAGATGAAGACTGA 1122 0.4367 METQFNHNLFERRPIFKSKTPAVKWVKEWVPQDIVATGGNCMLFRWVTEDTLKALKDKENEPSVPEPEPEPTTEVLFLCSYEGCGKTFIDAGSLRKHSHIHGERQFVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNGSVDVTVAKYTPPSEKQTKTTKSSGGAYGSASSDRPFACPYEGCEKAYIHEYKLKLHLKREHPEHMSDENAENAQANADNGMDEASDQDAYSGKRSNGRSQKQSKPKQNLKLPPSKVARRKGSTPSATLNVIKKPWPVKDETYEEDSEETEDEDRDNVEDGWRYARNNEDDDEETEDED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1359 373 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Glsi03g1359 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Glsi03g1359 373 SUPERFAMILY beta-beta-alpha zinc fingers 226 255 IPR036236 -
Glsi03g1359 373 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Glsi03g1359 373 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Glsi03g1359 373 MobiDBLite consensus disorder prediction 336 350 - -
Glsi03g1359 373 FunFam zinc finger transcription factor YY1 77 102 - -
Glsi03g1359 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Glsi03g1359 373 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Glsi03g1359 373 Gene3D Classic Zinc Finger 77 102 - -
Glsi03g1359 373 Gene3D Classic Zinc Finger 134 161 - -
Glsi03g1359 373 FunFam Zinc finger protein 410 134 161 - -
Glsi03g1359 373 FunFam zinc finger transcription factor YY1 163 194 - -
Glsi03g1359 373 ProSitePatterns Zinc finger C2H2 type domain signature. 233 256 IPR013087 -
Glsi03g1359 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 231 261 IPR013087 -
Glsi03g1359 373 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Glsi03g1359 373 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Glsi03g1359 373 MobiDBLite consensus disorder prediction 205 228 - -
Glsi03g1359 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Glsi03g1359 373 MobiDBLite consensus disorder prediction 205 224 - -
Glsi03g1359 373 MobiDBLite consensus disorder prediction 273 373 - -
Glsi03g1359 373 MobiDBLite consensus disorder prediction 285 304 - -
Glsi03g1359 373 Gene3D Classic Zinc Finger 205 274 - -
Glsi03g1359 373 Gene3D Classic Zinc Finger 103 133 - -
Glsi03g1359 373 Gene3D Classic Zinc Finger 163 195 - -
Glsi03g1359 373 FunFam Putative zinc finger protein 143 103 133 - -
Glsi03g1359 373 FunFam Zinc finger transcription factor YY1 206 273 - -
Glsi03g1359 373 SMART c2h2final6 136 160 IPR013087 -
Glsi03g1359 373 SMART c2h2final6 166 190 IPR013087 -
Glsi03g1359 373 SMART c2h2final6 231 256 IPR013087 -
Glsi03g1359 373 SMART c2h2final6 106 130 IPR013087 -
Glsi03g1359 373 SMART c2h2final6 77 101 IPR013087 -
Glsi03g1359 373 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Glsi03g1359 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Glsi03g1359 373 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 12 350 - -
Glsi03g1359 373 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1359 Glsi-ChrGlsi03 75657729 75664664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1359 8 359 C2H2 Transcription Factor Family AT4G06634 63.144 8.77e-148 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi03g1359 zf-C2H2 0.0089 CL0361