Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1358 ATGTCTGGTGCTGACATCAATTTGCCAGCAGCATTTGAGCAGCTGGTGGTGTACAAGGAGTGCAGGCACAACCATGCTGCTGCCCTTGGCCGGGTCTCCTTGGATGGCTGCCAGGAGTTTCTCAAGTCTGCAGACGAGGGTTCCAAGGAGGCCATGCTCTGCATTGCATGTGGCTGCCACCGGAATTTTCACCGGAGAGACACCGTTTATAACCCCATCATATCAGCCACCACCCAGGCCCTGCATGAGTTTCTCAATGCAGAGAGTGGTGCAATTACAGCAGCCCCATCCGCGTCCTGTGTTCAACTCGTCAGCCAAAGGACGATAAATGTTAATGCAGCAGGTGGTGGAAACAACCCGCCAGAGGAGGAAATGTTGCCCAGCCGGAAGAAGAGGACAATGTTTACGCCGGAGCAGAGGAGCAGGATGATAAGATTTGCGGAGAGGTTGGGATGGAGGGCACAGAGAGCAGAAAAGGAAGAGATCCTGCAGTTCTGCTTGGAGATAGGAATCAGCCGCAGAATGTTCCTTGTGTGGCTCAGCAACAAGCGGAGAAGGGCGGCTCAGATTAACACCACCACCACCACTACCACCACCACTGTTTGA 606 0.538 MSGADINLPAAFEQLVVYKECRHNHAAALGRVSLDGCQEFLKSADEGSKEAMLCIACGCHRNFHRRDTVYNPIISATTQALHEFLNAESGAITAAPSASCVQLVSQRTINVNAAGGGNNPPEEEMLPSRKKRTMFTPEQRSRMIRFAERLGWRAQRAEKEEILQFCLEIGISRRMFLVWLSNKRRRAAQINTTTTTTTTTV 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1358 201 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 67 IPR006456 -
Glsi03g1358 201 SUPERFAMILY Homeodomain-like 115 187 IPR009057 -
Glsi03g1358 201 Gene3D - 115 189 - -
Glsi03g1358 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 184 - -
Glsi03g1358 201 NCBIfam homeobox domain, ZF-HD class 129 184 IPR006455 -
Glsi03g1358 201 Pfam ZF-HD protein dimerisation region 16 68 IPR006456 -
Glsi03g1358 201 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 67 IPR006456 -
Glsi03g1358 201 ProSiteProfiles 'Homeobox' domain profile. 126 190 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1358 Glsi-ChrGlsi03 75650873 75651690 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1358 15 189 ZF-HD Transcription Factor Family AT2G02540 33.010 1.85e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi03g1358 ZF-HD_dimer 3.8e-24 No_clan