Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1357 ATGTCTGGTATTAACATAAATTTACCACCAGCGTTTGAGCAGGAGGTGGTATACAAGGAGTGCAGGCACAACCATGCTGCTGCCCTCGGCCGGGTCTCCTTCGATGGCTGCCGGGAGTTTCTCAAGTCCGGAGACGACGGTTCCAAGGAGGCCATGCTCTGCATTGCATGTGGCTGCCACCGGAATTTTCACCGGAGAGACACCGTTTATAACCCCATCATAGCAGCCACCACCCAGGTCCAGCAGGACTTTGTCAATGCAGAAAGTGGTGCAATTCCAGCAGGCCCATCTTCGTCCCGCGTTCAATTCATCCGCCGAAAGACGATGAATACTGCCGGTGGTGTAAACAACTCACCGGAGGACGAAATGGTGCCAAGCCGGAAGAAGAGGACGATGTTTACGCCAGACCAGAGAAGCAGGATGATAAGATTTGCAGAGAGGTTGGGATGGAGGCCACAGAGAGCAGACAAGGAAGAGATGCAGCAGTTCTGCTTGGAGATGGGAATCAGCCGCAGAATGTTCCTCGTGTGGCTCAGCAACAACCGGAGAAGGGTGGTTCAGAATAACGCCGCCGCCGCCGCCGCCACTGTTTGA 594 0.5455 MSGININLPPAFEQEVVYKECRHNHAAALGRVSFDGCREFLKSGDDGSKEAMLCIACGCHRNFHRRDTVYNPIIAATTQVQQDFVNAESGAIPAGPSSSRVQFIRRKTMNTAGGVNNSPEDEMVPSRKKRTMFTPDQRSRMIRFAERLGWRPQRADKEEMQQFCLEMGISRRMFLVWLSNNRRRVVQNNAAAAAATV 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1357 197 Gene3D - 112 187 - -
Glsi03g1357 197 ProSiteProfiles 'Homeobox' domain profile. 124 188 IPR001356 GO:0003677
Glsi03g1357 197 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 183 - -
Glsi03g1357 197 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 67 IPR006456 -
Glsi03g1357 197 SUPERFAMILY Homeodomain-like 113 185 IPR009057 -
Glsi03g1357 197 Pfam ZF-HD protein dimerisation region 16 68 IPR006456 -
Glsi03g1357 197 NCBIfam homeobox domain, ZF-HD class 127 182 IPR006455 -
Glsi03g1357 197 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 67 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1357 Glsi-ChrGlsi03 75646097 75647202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi03g1357 16 189 ZF-HD Transcription Factor Family AT1G14440 35.533 2.06e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Glsi03g1357 ZF-HD_dimer 5.1e-24 No_clan