Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi03g1340 ATGTCATCCTCTGGCTCATGGACTGCTGAGGACAAAAAAGCCTTTCAAAAGGCTCTAGCTGTTTATGACAAGGACACCCCTGATCGTTGGTACAATATTGCCAAGGCTGTCGGTGGCAAAACTGTAGAGGAAGTGAAGAGGCAATATGAGCTCTTTGCGCAGGACACTAGGCATATTGAATCAGGACAATTGCCCTTCCCAAGTGACGGGAAAGGTGGAGGCTCTGACAAGGAACAAAGAGAACATATTCAAAGTTCCACCTCCACCATCCCTCTGGGGAGGATAGAGGTGAGTTCAAAAGCGAAAGGCAAAGATGAATTTGTATCAGAAATCAGAGAGTCAGAGCGTCAACAATTGCGAGAGCTTAGGAAGATTCTAATTCACGACTTCTTGAGGCTCCTGAGGATAAGGGATTTTTTAAGCCTCATTTTAACATATCCTATGAGAATGCCGGACCAACACTTGCTGAGGAAATGGATAGATGATGCTCAAGCGCAAACTGCCAAATACTCTGAACACACAGATTTCATTGTGATAGAAGATAGTGAGAAGTTCATATTCAATGAAACTGCCGTTGCTCAATCAGAGGATGTAGGCGCTTCTGCCAGCATGAGCAAAGGGAAAAAGGTTGAGAATATTAAACAGTCAATATCCCGGCTTCAGTCAGAGTCGCCCTCCGTTAAGAGATTCAAGGGGATGAAAGCAGAACCAGTGTTCATCAAGGAGCTCACGGTCACTGATGTCGATCATGGGTTGTCCTTTCCAACGGAACATCTGGACATTCTCCCACAAGCTGCAGGTGATCCGTCTATGCCAGCGGAGTTTCAAGTGCTGTGTGGAGACGAGGTGCGAACGTTTCGCTGTATAAAACGAAGACATGGATATCCGAAACCAGTTATAGACGGTGGTTGGTCTGATCTTGTTAAAGATAGAGGGATCCAAATTGGTGATGTGCTTCGGTTCTACATGAAACTAAGTCATGATGGAGCTACACGCTATTGGATTGAAATTCACCGATTCGAGGACCACAACGATGAGACGGGCGTAGGTTGGAATACAATTCGCATTGTCTAA 1074 0.4544 MSSSGSWTAEDKKAFQKALAVYDKDTPDRWYNIAKAVGGKTVEEVKRQYELFAQDTRHIESGQLPFPSDGKGGGSDKEQREHIQSSTSTIPLGRIEVSSKAKGKDEFVSEIRESERQQLRELRKILIHDFLRLLRIRDFLSLILTYPMRMPDQHLLRKWIDDAQAQTAKYSEHTDFIVIEDSEKFIFNETAVAQSEDVGASASMSKGKKVENIKQSISRLQSESPSVKRFKGMKAEPVFIKELTVTDVDHGLSFPTEHLDILPQAAGDPSMPAEFQVLCGDEVRTFRCIKRRHGYPKPVIDGGWSDLVKDRGIQIGDVLRFYMKLSHDGATRYWIEIHRFEDHNDETGVGWNTIRIV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi03g1340 357 Gene3D - 1 66 - -
Glsi03g1340 357 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Glsi03g1340 357 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Glsi03g1340 357 FunFam Transcription factor SRM1 1 66 - -
Glsi03g1340 357 CDD SANT 6 49 IPR001005 -
Glsi03g1340 357 Gene3D - 237 349 IPR015300 -
Glsi03g1340 357 SMART sant 3 55 IPR001005 -
Glsi03g1340 357 CDD B3_DNA 237 339 IPR003340 GO:0003677
Glsi03g1340 357 MobiDBLite consensus disorder prediction 61 88 - -
Glsi03g1340 357 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Glsi03g1340 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 81 IPR044636 GO:0003700
Glsi03g1340 357 SUPERFAMILY DNA-binding pseudobarrel domain 237 324 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi03g1340 Glsi-ChrGlsi03 75359141 75364773 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi03g1340 None None None